Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.
Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.
The analysis has identified:
The stringent criterion (both callers) has left:
237 unique insertions that passed the stringent filtering. (9.4% of the total unique insertions), had at least one occurrence genotyped as 0/0.
These amount to 311 total count (6.5% of filter-passing occurrences).
179 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 253 insertion counts.
Of these fully wrong calls, 105 were only found on a single patient each (58.7% of the 179).
The strict criteria missed calls for 133 unique insertions (5.2%).
These mean a total of 133 occurrences, out of 4 752 calls that passed the stringent filter.
133 unique insertions had more false negative occurrences than positive ones.
The discrepancies between genotyping and the lax filtering is also summarized in the table below.
Criterion | Unique INS with false positives (%) | Total false positives (%) | Unique INS (total) with all false positives | Unique INS with false negatives (%) | Total false negatives (Total positives) | Unique INS with more false negatives than positives |
|---|---|---|---|---|---|---|
Strict | 237 | 311 | 179 | 133 | 133 | 133 |
Lax | 692 | 920 | 597 | 0 | 0 | 0 |
The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.
821 TE insertions were found on all cases in homozygosis.
Position | Length | Type | AF |
|---|---|---|---|
chr1:1 477 853 | 133 | SINE (AluSp) | 1 |
chr1:1 993 703 | 145 | SINE (FLAM_C) | 1 |
chr1:6 715 538 | 39 | Retroposon (SVA_D) | 1 |
chr1:8 501 370 | 48 | Retroposon (SVA_F) | 1 |
chr1:9 170 366 | 317 | SINE (AluY) | 1 |
chr1:9 968 550 | 139 | SINE (AluSx3) | 1 |
chr1:13 658 369 | 125 | Retroposon (SVA_F) | 1 |
chr1:16 424 204 | 134 | SINE (AluYk2) | 1 |
chr1:17 868 629 | 65 | DNA (MADE1) | 1 |
chr1:21 166 095 | 315 | SINE (AluYa5) | 1 |
chr1:33 052 502 | 101 | Retroposon (SVA_F) | 1 |
chr1:37 967 098 | 314 | SINE (AluY) | 1 |
chr1:44 876 572 | 397 | Retroposon (SVA_E) | 1 |
chr1:46 242 226 | 47 | Retroposon (SVA_F) | 1 |
chr1:51 711 474 | 317 | Retroposon (SVA_A) | 1 |
chr1:52 869 959 | 98 | Retroposon (SVA_F) | 1 |
chr1:64 201 483 | 273 | Retroposon (SVA_E) | 1 |
chr1:64 492 377 | 342 | SINE (AluY) | 1 |
chr1:69 465 246 | 36 | LINE (L1P3) | 1 |
chr1:69 625 372 | 326 | SINE (AluYa5) | 1 |
chr1:74 989 508 | 40 | LINE (L1P1) | 1 |
chr1:80 703 232 | 65 | LINE (L1P2) | 1 |
chr1:81 846 355 | 322 | SINE (AluYb8) | 1 |
chr1:90 891 771 | 48 | Retroposon (SVA_F) | 1 |
chr1:92 701 961 | 323 | SINE (AluYa5) | 1 |
chr1:93 032 654 | 332 | SINE (AluYa5) | 1 |
chr1:97 252 071 | 324 | SINE (AluYk3) | 1 |
chr1:100 528 653 | 328 | SINE (AluYb9) | 1 |
chr1:100 819 211 | 509 | LINE (L1M5) | 1 |
chr1:103 272 219 | 96 | LTR (HERVL-int) | 1 |
chr1:104 511 448 | 318 | SINE (AluYa5) | 1 |
chr1:104 688 480 | 134 | SINE (AluY) | 1 |
chr1:108 675 986 | 158 | Retroposon (SVA_A) | 1 |
chr1:117 430 030 | 174 | Retroposon (SVA_F) | 1 |
chr1:120 402 187 | 29 | SINE (Alu) | 1 |
chr1:125 013 223 | 222 | LINE (L1PA3) | 1 |
chr1:147 949 446 | 117 | Retroposon (SVA_F) | 1 |
chr1:149 920 127 | 340 | SINE (AluY) | 1 |
chr1:151 769 291 | 90 | Retroposon (SVA_F) | 1 |
chr1:156 328 044 | 140 | Retroposon (SVA_F) | 1 |
chr1:159 449 987 | 90 | Retroposon (SVA_C) | 1 |
chr1:162 791 517 | 316 | SINE (AluYa5) | 1 |
chr1:169 391 853 | 42 | LTR (PABL_A) | 1 |
chr1:169 993 600 | 163 | SINE (AluSz) | 1 |
chr1:172 571 914 | 354 | Retroposon (SVA_F) | 1 |
chr1:179 522 822 | 352 | SINE (AluYb9) | 1 |
chr1:180 888 412 | 320 | SINE (AluYa5) | 1 |
chr1:188 469 075 | 304 | SINE (AluY) | 1 |
chr1:191 611 634 | 324 | SINE (AluYa5) | 1 |
chr1:194 705 994 | 328 | SINE (AluY) | 1 |
chr1:196 184 399 | 331 | SINE (AluYb8) | 1 |
chr1:196 792 226 | 323 | SINE (AluYb8) | 1 |
chr1:196 810 057 | 129 | SINE (AluYa5) | 1 |
chr1:203 919 175 | 225 | Retroposon (SVA_F) | 1 |
chr1:214 869 357 | 95 | Retroposon (SVA_F) | 1 |
chr1:220 466 556 | 97 | Retroposon (SVA_F) | 1 |
chr1:222 697 340 | 328 | SINE (AluYb8) | 1 |
chr1:228 824 170 | 324 | SINE (AluYk2) | 1 |
chr1:235 635 569 | 167 | LTR (MSTB) | 1 |
chr1:239 971 543 | 326 | SINE (AluYa5) | 1 |
chr1:241 326 641 | 326 | SINE (AluYb8) | 1 |
chr1:245 826 009 | 324 | SINE (AluSx3) | 1 |
chr1:248 911 737 | 126 | Retroposon (SVA_F) | 1 |
chr2:1 199 165 | 306 | SINE (AluY) | 1 |
chr2:1 467 941 | 329 | SINE (AluY) | 1 |
chr2:2 295 538 | 173 | LTR (HERVIP10FH-int) | 1 |
chr2:3 591 088 | 128 | Retroposon (SVA_F) | 1 |
chr2:9 748 659 | 324 | SINE (AluYb8) | 1 |
chr2:11 286 233 | 324 | SINE (AluY) | 1 |
chr2:15 379 414 | 312 | SINE (AluY) | 1 |
chr2:15 541 819 | 152 | Retroposon (SVA_F) | 1 |
chr2:21 573 937 | 297 | SINE (AluYd8) | 1 |
chr2:27 539 883 | 126 | Retroposon (SVA_F) | 1 |
chr2:31 336 815 | 310 | SINE (AluYa5) | 1 |
chr2:31 727 126 | 318 | SINE (AluYa5) | 1 |
chr2:43 063 211 | 39 | Retroposon (SVA_F) | 1 |
chr2:44 598 695 | 316 | SINE (AluYa5) | 1 |
chr2:46 701 810 | 298 | SINE (AluYa5) | 1 |
chr2:48 555 313 | 47 | Retroposon (SVA_F) | 1 |
chr2:50 375 490 | 328 | SINE (AluYb8) | 1 |
chr2:54 446 445 | 320 | SINE (AluY) | 1 |
chr2:63 552 086 | 325 | SINE (AluYb8) | 1 |
chr2:64 872 901 | 329 | SINE (AluYb8) | 1 |
chr2:65 106 650 | 304 | SINE (AluYc) | 1 |
chr2:66 431 844 | 325 | SINE (AluYe5) | 1 |
chr2:75 160 770 | 314 | SINE (AluY) | 1 |
chr2:76 030 574 | 233 | SINE (AluYb8) | 1 |
chr2:80 541 884 | 269 | SINE (AluYa5) | 1 |
chr2:84 501 628 | 312 | SINE (AluYg6) | 1 |
chr2:84 608 279 | 36 | DNA (Tigger1) | 1 |
chr2:85 488 315 | 77 | Retroposon (SVA_F) | 1 |
chr2:87 180 576 | 493 | LINE (L1HS) | 1 |
chr2:105 836 109 | 316 | SINE (AluYf1) | 1 |
chr2:105 969 153 | 321 | SINE (AluYa5) | 1 |
chr2:111 283 808 | 329 | SINE (AluYa5) | 1 |
chr2:113 395 042 | 127 | Retroposon (SVA_F) | 1 |
chr2:127 981 347 | 120 | LTR (LTR21B) | 1 |
chr2:137 419 374 | 101 | SINE (AluY) | 1 |
chr2:137 419 414 | 60 | SINE (AluYb8) | 1 |
chr2:151 875 949 | 48 | Retroposon (SVA_F) | 1 |
chr2:152 391 750 | 328 | SINE (AluYg6) | 1 |
chr2:153 896 067 | 331 | SINE (AluYa5) | 1 |
chr2:161 095 804 | 300 | SINE (AluSx) | 1 |
chr2:171 866 581 | 402 | Retroposon (SVA_A) | 1 |
chr2:174 871 203 | 318 | SINE (AluYa5) | 1 |
chr2:177 453 984 | 333 | SINE (AluYb8) | 1 |
chr2:177 486 724 | 340 | SINE (AluY) | 1 |
chr2:188 711 105 | 90 | LTR (MER11B) | 1 |
chr2:190 430 797 | 94 | Retroposon (SVA_F) | 1 |
chr2:191 975 312 | 330 | SINE (AluYb8) | 1 |
chr2:192 131 143 | 119 | LTR (HERVH-int) | 1 |
chr2:197 898 723 | 311 | SINE (AluY) | 1 |
chr2:202 534 992 | 49 | Retroposon (SVA_F) | 1 |
chr2:214 336 906 | 323 | SINE (AluYb8) | 1 |
chr2:215 683 694 | 326 | SINE (AluYb8) | 1 |
chr2:217 316 033 | 304 | SINE (AluYb8) | 1 |
chr2:221 579 730 | 36 | SINE (AluSg4) | 1 |
chr2:229 743 530 | 96 | Retroposon (SVA_F) | 1 |
chr2:231 558 287 | 318 | SINE (AluYk2) | 1 |
chr2:232 905 863 | 48 | Retroposon (SVA_F) | 1 |
chr3:4 163 465 | 314 | SINE (AluYa5) | 1 |
chr3:10 070 465 | 208 | Retroposon (SVA_F) | 1 |
chr3:11 487 519 | 522 | Retroposon (SVA_F) | 1 |
chr3:12 095 537 | 325 | SINE (AluY) | 1 |
chr3:18 993 945 | 331 | SINE (AluY) | 1 |
chr3:25 249 858 | 71 | LINE (L1M2) | 1 |
chr3:28 665 552 | 268 | SINE (AluY) | 1 |
chr3:31 839 889 | 327 | SINE (AluYb8) | 1 |
chr3:35 469 102 | 65 | LTR (LTR12_v) | 1 |
chr3:48 483 715 | 47 | Retroposon (SVA_F) | 1 |
chr3:50 841 730 | 331 | SINE (AluYb8) | 1 |
chr3:51 249 632 | 77 | Retroposon (SVA_D) | 1 |
chr3:75 289 661 | 222 | Retroposon (SVA_F) | 1 |
chr3:79 502 727 | 40 | LTR (LTR12C) | 1 |
chr3:80 915 723 | 308 | SINE (AluYb8) | 1 |
chr3:83 254 913 | 136 | SINE (AluYk2) | 1 |
chr3:87 471 316 | 279 | SINE (AluYa5) | 1 |
chr3:91 345 076 | 143 | LTR (MLT1D) | 1 |
chr3:95 745 261 | 47 | Retroposon (SVA_B) | 1 |
chr3:103 734 535 | 312 | SINE (AluYa5) | 1 |
chr3:106 111 381 | 456 | Retroposon (SVA_F) | 1 |
chr3:106 508 513 | 28 | DNA (HSMAR2) | 1 |
chr3:107 335 062 | 34 | LINE (L1HS) | 1 |
chr3:111 444 270 | 31 | LINE (L1P3) | 1 |
chr3:112 205 623 | 49 | LINE (L1P3) | 1 |
chr3:117 050 497 | 39 | Retroposon (SVA_D) | 1 |
chr3:124 922 697 | 135 | SINE (AluSx) | 1 |
chr3:128 676 364 | 312 | SINE (AluYe5) | 1 |
chr3:130 219 573 | 318 | SINE (AluYe5) | 1 |
chr3:136 893 195 | 105 | LINE (L1P5) | 1 |
chr3:143 475 998 | 314 | SINE (AluYa5) | 1 |
chr3:151 664 878 | 77 | LTR (HERV9N-int) | 1 |
chr3:151 820 689 | 171 | SINE (AluYa5) | 1 |
chr3:153 444 920 | 150 | SINE (AluY) | 1 |
chr3:157 848 540 | 37 | SINE (Alu) | 1 |
chr3:166 644 514 | 340 | SINE (AluYa5) | 1 |
chr3:166 672 433 | 312 | SINE (AluY) | 1 |
chr3:174 692 945 | 321 | SINE (AluYb8) | 1 |
chr3:176 373 528 | 154 | LINE (L1HS) | 1 |
chr3:176 425 229 | 305 | SINE (AluYa5) | 1 |
chr3:178 393 249 | 329 | SINE (AluYb8) | 1 |
chr3:182 153 141 | 129 | LINE (L1P3) | 1 |
chr3:197 823 074 | 31 | SINE (Alu) | 1 |
chr3:197 847 677 | 57 | DNA (MADE1) | 1 |
chr4:550 879 | 267 | Retroposon (SVA_A) | 1 |
chr4:1 308 027 | 317 | SINE (AluYk2) | 1 |
chr4:1 319 643 | 132 | SINE (AluJb) | 1 |
chr4:4 357 815 | 132 | LINE (L1MB3) | 1 |
chr4:9 449 339 | 137 | LINE (L1M3) | 1 |
chr4:13 761 218 | 145 | Retroposon (SVA_E) | 1 |
chr4:14 955 276 | 114 | LTR (MSTB) | 1 |
chr4:15 615 466 | 237 | LTR (LTR12C) | 1 |
chr4:31 839 792 | 308 | SINE (AluYg6) | 1 |
chr4:40 074 275 | 36 | SINE (AluSx4) | 1 |
chr4:42 086 022 | 315 | SINE (AluYa5) | 1 |
chr4:43 397 964 | 337 | SINE (AluY) | 1 |
chr4:43 846 679 | 39 | LTR (LTR12E) | 1 |
chr4:45 208 622 | 111 | Retroposon (SVA_A) | 1 |
chr4:46 378 053 | 292 | Retroposon (SVA_F) | 1 |
chr4:47 494 499 | 314 | SINE (AluYb8) | 1 |
chr4:47 542 099 | 333 | SINE (AluY) | 1 |
chr4:52 081 944 | 147 | LINE (L3) | 1 |
chr4:52 465 599 | 47 | Retroposon (SVA_F) | 1 |
chr4:54 154 800 | 160 | LTR (LTR12C) | 1 |
chr4:54 993 952 | 159 | LTR (LTR12C) | 1 |
chr4:63 062 067 | 184 | LTR (LTR12E) | 1 |
chr4:66 240 879 | 318 | SINE (AluYa5) | 1 |
chr4:67 098 159 | 309 | SINE (AluY) | 1 |
chr4:85 583 924 | 72 | LINE (L1HS) | 1 |
chr4:85 877 580 | 34 | SINE (Alu) | 1 |
chr4:98 046 002 | 54 | LINE (L1M3de) | 1 |
chr4:103 823 449 | 303 | SINE (AluYa5) | 1 |
chr4:106 399 078 | 63 | LINE (L1M4c) | 1 |
chr4:109 597 329 | 95 | Retroposon (SVA_F) | 1 |
chr4:109 597 452 | 98 | Retroposon (SVA_F) | 1 |
chr4:114 628 762 | 317 | SINE (AluYb8) | 1 |
chr4:118 853 560 | 317 | SINE (AluYa5) | 1 |
chr4:120 661 088 | 326 | SINE (AluYb8) | 1 |
chr4:124 026 067 | 292 | SINE (AluYb8) | 1 |
chr4:134 001 190 | 306 | SINE (AluYb9) | 1 |
chr4:134 209 110 | 327 | SINE (AluY) | 1 |
chr4:136 885 359 | 139 | SINE (AluYa5) | 1 |
chr4:141 691 101 | 48 | LTR (THE1D) | 1 |
chr4:147 132 785 | 324 | SINE (AluY) | 1 |
chr4:150 660 237 | 97 | Retroposon (SVA_F) | 1 |
chr4:150 953 967 | 79 | Retroposon (SVA_A) | 1 |
chr4:151 214 784 | 126 | Retroposon (SVA_F) | 1 |
chr4:159 524 187 | 126 | Retroposon (SVA_F) | 1 |
chr4:163 836 593 | 223 | SINE (AluY) | 1 |
chr4:170 166 495 | 36 | Retroposon (SVA_D) | 1 |
chr4:170 507 632 | 316 | SINE (AluY) | 1 |
chr4:174 290 427 | 311 | SINE (AluYe5) | 1 |
chr4:175 181 019 | 62 | LINE (L1PREC2) | 1 |
chr4:178 277 156 | 320 | SINE (AluYa5) | 1 |
chr4:183 736 102 | 49 | Retroposon (SVA_D) | 1 |
chr4:188 393 872 | 314 | SINE (AluY) | 1 |
chr4:189 108 732 | 54 | LTR (MER57-int) | 1 |
chr4:189 404 991 | 71 | LTR (MST-int) | 1 |
chr4:189 484 408 | 60 | LTR (HERVH-int) | 1 |
chr4:189 508 192 | 151 | LINE (L1M4) | 1 |
chr5:1 585 386 | 314 | SINE (AluY) | 1 |
chr5:1 586 019 | 38 | Retroposon (SVA_D) | 1 |
chr5:1 812 525 | 311 | SINE (AluYa5) | 1 |
chr5:4 075 719 | 319 | SINE (AluYa5) | 1 |
chr5:5 595 126 | 305 | SINE (AluYe5) | 1 |
chr5:16 277 322 | 38 | Retroposon (SVA_D) | 1 |
chr5:16 716 503 | 310 | SINE (AluYg6) | 1 |
chr5:17 024 109 | 183 | SINE (AluSx) | 1 |
chr5:17 712 495 | 332 | SINE (AluY) | 1 |
chr5:20 471 978 | 279 | LINE (L2a) | 1 |
chr5:34 113 145 | 321 | SINE (AluYa5) | 1 |
chr5:54 087 760 | 65 | SINE (AluYk2) | 1 |
chr5:55 433 459 | 334 | SINE (AluYb8) | 1 |
chr5:55 569 961 | 319 | SINE (AluY) | 1 |
chr5:55 696 695 | 293 | Retroposon (SVA_A) | 1 |
chr5:56 632 138 | 309 | SINE (AluYa5) | 1 |
chr5:62 339 522 | 310 | SINE (AluY) | 1 |
chr5:64 476 133 | 47 | LINE (L1P2) | 1 |
chr5:65 940 635 | 48 | Retroposon (SVA_F) | 1 |
chr5:69 515 538 | 96 | Retroposon (SVA_F) | 1 |
chr5:77 043 481 | 48 | Retroposon (SVA_F) | 1 |
chr5:77 395 389 | 313 | SINE (AluY) | 1 |
chr5:77 794 938 | 47 | Retroposon (SVA_F) | 1 |
chr5:84 943 815 | 680 | LINE (L1HS) | 1 |
chr5:87 076 864 | 295 | SINE (AluYa5) | 1 |
chr5:113 935 587 | 78 | LTR (LTR62) | 1 |
chr5:115 404 023 | 289 | SINE (AluYe5) | 1 |
chr5:117 973 457 | 176 | LTR (MST-int) | 1 |
chr5:134 427 214 | 300 | SINE (AluYa5) | 1 |
chr5:149 537 753 | 323 | SINE (AluYa5) | 1 |
chr5:151 982 651 | 48 | LINE (L1PBa) | 1 |
chr5:155 060 117 | 42 | LINE (L1P1) | 1 |
chr5:159 290 155 | 314 | SINE (AluYa5) | 1 |
chr5:162 804 935 | 314 | SINE (AluY) | 1 |
chr5:178 458 165 | 62 | LINE (L1MC5) | 1 |
chr6:1 051 552 | 186 | LTR (MSTC) | 1 |
chr6:7 441 878 | 81 | LTR (LTR12D) | 1 |
chr6:11 896 739 | 37 | LINE (L1MC) | 1 |
chr6:13 521 017 | 329 | SINE (AluYb8) | 1 |
chr6:18 346 153 | 309 | SINE (AluYa5) | 1 |
chr6:19 940 517 | 400 | Retroposon (SVA_F) | 1 |
chr6:31 329 004 | 343 | SINE (AluSx) | 1 |
chr6:32 547 335 | 86 | LTR (LTR12C) | 1 |
chr6:32 719 390 | 314 | SINE (AluY) | 1 |
chr6:32 720 800 | 332 | SINE (AluYe5) | 1 |
chr6:32 805 657 | 314 | SINE (AluYa5) | 1 |
chr6:34 398 194 | 150 | Retroposon (SVA_F) | 1 |
chr6:37 000 766 | 324 | SINE (AluYb8) | 1 |
chr6:43 927 736 | 316 | SINE (AluY) | 1 |
chr6:49 487 167 | 104 | LINE (L1MC5) | 1 |
chr6:52 969 272 | 73 | SINE (AluSq2) | 1 |
chr6:53 744 881 | 282 | SINE (AluY) | 1 |
chr6:60 676 390 | 42 | LTR (MLT1G1) | 1 |
chr6:62 587 058 | 43 | LTR (HERVH-int) | 1 |
chr6:63 052 338 | 84 | LINE (L1PREC2) | 1 |
chr6:67 072 446 | 314 | SINE (AluYb8) | 1 |
chr6:68 932 874 | 326 | SINE (AluYk2) | 1 |
chr6:77 679 471 | 38 | DNA (Tigger3c) | 1 |
chr6:81 587 704 | 321 | SINE (AluY) | 1 |
chr6:82 633 657 | 57 | LINE (L1P1) | 1 |
chr6:85 220 081 | 101 | LINE (L1M1) | 1 |
chr6:96 497 728 | 68 | LINE (L1P3) | 1 |
chr6:96 569 793 | 322 | SINE (AluYb8) | 1 |
chr6:96 639 702 | 96 | LINE (L1P1) | 1 |
chr6:99 650 398 | 39 | Retroposon (SVA_F) | 1 |
chr6:102 510 590 | 315 | SINE (AluYa5) | 1 |
chr6:107 078 566 | 137 | SINE (AluY) | 1 |
chr6:107 803 221 | 36 | Retroposon (SVA_D) | 1 |
chr6:114 768 706 | 105 | SINE (AluSc) | 1 |
chr6:120 247 099 | 318 | SINE (AluYk2) | 1 |
chr6:121 840 534 | 102 | LINE (L2a) | 1 |
chr6:122 848 426 | 175 | Retroposon (SVA_F) | 1 |
chr6:130 952 342 | 320 | SINE (AluYb8) | 1 |
chr6:136 151 778 | 70 | SINE (AluSg) | 1 |
chr6:136 933 052 | 277 | SINE (AluYa5) | 1 |
chr6:141 449 731 | 318 | SINE (AluYa5) | 1 |
chr6:143 630 226 | 311 | SINE (AluYa5) | 1 |
chr6:146 455 384 | 60 | LTR (HERVH-int) | 1 |
chr6:163 393 182 | 319 | SINE (AluYe6) | 1 |
chr6:166 711 308 | 318 | SINE (AluYb9) | 1 |
chr6:170 185 527 | 330 | SINE (AluY) | 1 |
chr7:6 904 658 | 58 | LTR (HERVH-int) | 1 |
chr7:10 465 285 | 225 | Retroposon (SVA_A) | 1 |
chr7:23 851 399 | 60 | LTR (MSTA) | 1 |
chr7:26 148 247 | 92 | Retroposon (SVA_F) | 1 |
chr7:26 148 327 | 94 | Retroposon (SVA_F) | 1 |
chr7:37 797 033 | 310 | SINE (AluYe5) | 1 |
chr7:38 720 097 | 322 | SINE (AluYb8) | 1 |
chr7:39 710 092 | 331 | SINE (AluYb8) | 1 |
chr7:42 608 043 | 321 | SINE (AluYa5) | 1 |
chr7:44 992 612 | 202 | Retroposon (SVA_A) | 1 |
chr7:45 749 603 | 323 | SINE (AluYa5) | 1 |
chr7:51 899 407 | 47 | LTR (MLT1A0) | 1 |
chr7:54 640 676 | 60 | SINE (Alu) | 1 |
chr7:55 783 652 | 304 | SINE (AluY) | 1 |
chr7:56 177 209 | 321 | SINE (AluYb8) | 1 |
chr7:64 419 799 | 324 | SINE (AluY) | 1 |
chr7:64 809 487 | 125 | Retroposon (SVA_F) | 1 |
chr7:67 889 013 | 38 | Retroposon (SVA_D) | 1 |
chr7:71 737 530 | 106 | LTR (LTR12C) | 1 |
chr7:74 809 479 | 193 | SINE (AluYa5) | 1 |
chr7:76 937 894 | 318 | SINE (AluY) | 1 |
chr7:77 509 892 | 591 | Retroposon (SVA_F) | 1 |
chr7:77 533 994 | 174 | Retroposon (SVA_F) | 1 |
chr7:81 043 607 | 40 | LTR (LTR12C) | 1 |
chr7:83 460 624 | 62 | LTR (HERVH-int) | 1 |
chr7:84 299 804 | 69 | SINE (FLAM_C) | 1 |
chr7:95 149 736 | 327 | SINE (AluYb8) | 1 |
chr7:101 359 188 | 222 | Retroposon (SVA_A) | 1 |
chr7:109 017 025 | 51 | LINE (L1PREC2) | 1 |
chr7:109 643 279 | 326 | SINE (AluYb8) | 1 |
chr7:110 844 692 | 96 | LINE (L1HS) | 1 |
chr7:114 192 099 | 48 | SINE (AluSg) | 1 |
chr7:128 289 264 | 315 | SINE (AluYi6) | 1 |
chr7:128 553 002 | 33 | SINE (AluSq) | 1 |
chr7:128 577 275 | 307 | Retroposon (SVA_B) | 1 |
chr7:129 517 319 | 317 | SINE (AluSx3) | 1 |
chr7:131 224 137 | 144 | SINE (AluJb) | 1 |
chr7:132 166 350 | 328 | SINE (AluY) | 1 |
chr7:136 494 045 | 329 | SINE (AluYe5) | 1 |
chr7:136 576 160 | 316 | LTR (HERVL-int) | 1 |
chr7:138 735 865 | 42 | SINE (AluSz) | 1 |
chr7:139 101 477 | 378 | Retroposon (SVA_A) | 1 |
chr7:150 506 304 | 47 | Retroposon (SVA_F) | 1 |
chr7:152 540 441 | 130 | SINE (AluSx) | 1 |
chr7:155 066 495 | 317 | SINE (AluYk2) | 1 |
chr7:155 096 901 | 73 | Retroposon (SVA_B) | 1 |
chr7:158 309 264 | 32 | LTR (MLT2A2) | 1 |
chr8:2 089 226 | 44 | SINE (Alu) | 1 |
chr8:4 595 369 | 94 | LINE (L1HS) | 1 |
chr8:6 196 794 | 91 | LINE (L1P2) | 1 |
chr8:9 153 996 | 48 | Retroposon (SVA_F) | 1 |
chr8:9 950 379 | 323 | SINE (AluYb8) | 1 |
chr8:13 059 195 | 154 | SINE (AluSx4) | 1 |
chr8:16 245 296 | 275 | SINE (AluYa5) | 1 |
chr8:22 625 878 | 328 | SINE (AluY) | 1 |
chr8:25 315 133 | 299 | SINE (AluYa5) | 1 |
chr8:33 904 132 | 284 | SINE (AluY) | 1 |
chr8:35 211 503 | 307 | SINE (AluYa5) | 1 |
chr8:41 412 941 | 334 | SINE (AluYb8) | 1 |
chr8:43 179 659 | 97 | Retroposon (SVA_F) | 1 |
chr8:54 125 422 | 223 | Retroposon (SVA_F) | 1 |
chr8:61 752 520 | 101 | Retroposon (SVA_F) | 1 |
chr8:64 686 416 | 77 | Retroposon (SVA_F) | 1 |
chr8:68 069 556 | 328 | SINE (AluYb8) | 1 |
chr8:69 245 774 | 39 | Retroposon (SVA_E) | 1 |
chr8:71 293 804 | 324 | SINE (AluYa5) | 1 |
chr8:74 463 097 | 317 | SINE (AluYa5) | 1 |
chr8:84 525 028 | 307 | SINE (AluYa5) | 1 |
chr8:86 067 390 | 320 | SINE (AluYb8) | 1 |
chr8:86 583 027 | 33 | SINE (Alu) | 1 |
chr8:86 807 595 | 35 | LINE (L1PA4) | 1 |
chr8:86 964 152 | 73 | LTR (MER52-int) | 1 |
chr8:97 447 378 | 31 | SINE (Alu) | 1 |
chr8:106 195 649 | 311 | SINE (AluYb9) | 1 |
chr8:107 110 857 | 72 | SINE (AluY) | 1 |
chr8:123 667 928 | 319 | SINE (AluYa5) | 1 |
chr8:124 877 714 | 282 | SINE (AluYa5) | 1 |
chr8:128 825 943 | 177 | Retroposon (SVA_F) | 1 |
chr8:131 341 813 | 323 | SINE (AluYa5) | 1 |
chr8:134 867 666 | 112 | LINE (L3) | 1 |
chr8:135 771 732 | 39 | LTR (HERVH-int) | 1 |
chr8:138 313 721 | 312 | SINE (AluY) | 1 |
chr8:140 037 950 | 330 | SINE (AluYa5) | 1 |
chr8:140 501 180 | 189 | LINE (L2) | 1 |
chr8:140 950 042 | 69 | LTR (MER52A) | 1 |
chr9:848 895 | 334 | SINE (AluYb9) | 1 |
chr9:2 351 286 | 315 | SINE (AluY) | 1 |
chr9:7 852 522 | 327 | SINE (AluYb9) | 1 |
chr9:8 102 217 | 79 | LINE (L1P4) | 1 |
chr9:15 234 394 | 125 | Retroposon (SVA_F) | 1 |
chr9:16 977 542 | 38 | Retroposon (SVA_F) | 1 |
chr9:19 365 709 | 95 | SINE (AluYa5) | 1 |
chr9:21 127 605 | 29 | LINE (L1P1) | 1 |
chr9:22 288 707 | 335 | SINE (AluYk2) | 1 |
chr9:26 492 841 | 36 | Retroposon (SVA_F) | 1 |
chr9:28 195 374 | 312 | SINE (AluYa5) | 1 |
chr9:28 960 602 | 322 | SINE (AluY) | 1 |
chr9:31 796 037 | 43 | LINE (L1M3) | 1 |
chr9:34 115 379 | 299 | SINE (AluY) | 1 |
chr9:34 169 254 | 117 | SINE (AluJb) | 1 |
chr9:34 904 794 | 102 | LINE (L1PB) | 1 |
chr9:35 018 978 | 63 | LINE (L1PA10) | 1 |
chr9:62 603 942 | 325 | SINE (AluY) | 1 |
chr9:67 083 505 | 299 | SINE (AluY) | 1 |
chr9:70 974 307 | 132 | SINE (AluY) | 1 |
chr9:72 616 616 | 313 | SINE (AluY) | 1 |
chr9:74 197 755 | 61 | Retroposon (SVA_F) | 1 |
chr9:90 432 247 | 306 | SINE (AluY) | 1 |
chr9:94 147 772 | 315 | SINE (AluYa5) | 1 |
chr9:100 667 656 | 68 | LTR (MER52A) | 1 |
chr9:112 514 852 | 225 | Retroposon (SVA_B) | 1 |
chr9:120 292 891 | 315 | SINE (AluYk2) | 1 |
chr9:121 971 181 | 299 | Retroposon (SVA_E) | 1 |
chr9:123 802 496 | 79 | LINE (L2) | 1 |
chr9:125 458 887 | 432 | Retroposon (SVA_E) | 1 |
chr9:125 577 664 | 257 | Retroposon (SVA_F) | 1 |
chr9:125 623 758 | 47 | Retroposon (SVA_F) | 1 |
chr9:129 514 654 | 70 | LTR (MER52A) | 1 |
chr9:131 370 206 | 65 | SINE (Alu) | 1 |
chr10:5 032 219 | 84 | LTR (LTR12C) | 1 |
chr10:6 206 499 | 76 | Retroposon (SVA_F) | 1 |
chr10:6 206 834 | 110 | Retroposon (SVA_D) | 1 |
chr10:8 869 284 | 492 | Retroposon (SVA_F) | 1 |
chr10:9 469 017 | 323 | SINE (AluYa5) | 1 |
chr10:17 950 565 | 117 | LTR (LTR12D) | 1 |
chr10:25 756 474 | 208 | LTR (LTR12E) | 1 |
chr10:27 640 988 | 319 | SINE (AluYb8) | 1 |
chr10:28 813 597 | 315 | SINE (AluYa5) | 1 |
chr10:28 816 354 | 312 | SINE (AluY) | 1 |
chr10:30 607 170 | 125 | SINE (AluSx) | 1 |
chr10:36 304 692 | 319 | SINE (AluY) | 1 |
chr10:39 479 348 | 341 | LINE (L1P1) | 1 |
chr10:52 707 167 | 322 | SINE (AluY) | 1 |
chr10:53 046 194 | 313 | SINE (AluYe5) | 1 |
chr10:55 002 597 | 62 | LTR (LOR1-int) | 1 |
chr10:60 365 085 | 294 | SINE (AluYb8) | 1 |
chr10:62 928 956 | 39 | Retroposon (SVA_A) | 1 |
chr10:66 576 999 | 327 | SINE (AluY) | 1 |
chr10:67 842 647 | 35 | LTR (MSTB2) | 1 |
chr10:68 235 132 | 326 | SINE (AluYb8) | 1 |
chr10:69 850 406 | 317 | SINE (AluY) | 1 |
chr10:69 992 832 | 491 | Retroposon (SVA_E) | 1 |
chr10:70 239 931 | 110 | Retroposon (SVA_A) | 1 |
chr10:71 869 465 | 123 | Retroposon (SVA_F) | 1 |
chr10:71 869 977 | 39 | Retroposon (SVA_C) | 1 |
chr10:71 902 232 | 313 | SINE (AluYa5) | 1 |
chr10:75 333 727 | 146 | Retroposon (SVA_C) | 1 |
chr10:88 055 211 | 319 | SINE (AluYa5) | 1 |
chr10:92 674 642 | 127 | Retroposon (SVA_F) | 1 |
chr10:92 975 822 | 224 | Retroposon (SVA_A) | 1 |
chr10:99 625 138 | 101 | LTR (LTR12) | 1 |
chr10:102 036 205 | 141 | Retroposon (SVA_F) | 1 |
chr10:104 057 438 | 192 | SINE (AluYb8) | 1 |
chr10:107 231 509 | 321 | SINE (AluYa5) | 1 |
chr10:108 693 707 | 833 | LINE (L1HS) | 1 |
chr10:112 314 098 | 311 | SINE (AluY) | 1 |
chr10:119 261 053 | 48 | Retroposon (SVA_F) | 1 |
chr10:120 215 110 | 392 | Retroposon (SVA_F) | 1 |
chr10:122 976 472 | 318 | SINE (AluY) | 1 |
chr11:428 013 | 320 | SINE (AluYe5) | 1 |
chr11:696 721 | 134 | SINE (AluJb) | 1 |
chr11:2 238 145 | 60 | LTR (ERVL-B4-int) | 1 |
chr11:2 332 518 | 39 | Retroposon (SVA_B) | 1 |
chr11:3 246 565 | 142 | SINE (AluYa5) | 1 |
chr11:5 114 182 | 178 | LINE (L1P3) | 1 |
chr11:5 194 322 | 40 | LTR (LTR12E) | 1 |
chr11:13 791 469 | 335 | SINE (AluYb9) | 1 |
chr11:19 860 077 | 224 | Retroposon (SVA_E) | 1 |
chr11:20 548 707 | 323 | Retroposon (SVA_E) | 1 |
chr11:25 583 576 | 324 | SINE (AluYb8) | 1 |
chr11:37 684 733 | 313 | SINE (AluYa5) | 1 |
chr11:38 779 509 | 315 | SINE (AluYa5) | 1 |
chr11:41 072 278 | 87 | DNA (Tigger1) | 1 |
chr11:45 738 485 | 275 | Retroposon (SVA_E) | 1 |
chr11:47 429 529 | 41 | SINE (AluJb) | 1 |
chr11:48 911 556 | 313 | SINE (AluY) | 1 |
chr11:59 645 320 | 382 | Retroposon (SVA_E) | 1 |
chr11:61 377 728 | 311 | SINE (AluYk12) | 1 |
chr11:63 893 356 | 258 | LINE (L1MB8) | 1 |
chr11:65 239 594 | 127 | Retroposon (SVA_F) | 1 |
chr11:67 655 021 | 311 | SINE (AluY) | 1 |
chr11:68 301 828 | 132 | SINE (AluY) | 1 |
chr11:74 066 263 | 47 | LINE (L1PA5) | 1 |
chr11:74 353 855 | 75 | Retroposon (SVA_C) | 1 |
chr11:77 098 714 | 222 | Retroposon (SVA_D) | 1 |
chr11:77 490 293 | 47 | Retroposon (SVA_F) | 1 |
chr11:81 124 396 | 30 | LTR (HERVH-int) | 1 |
chr11:89 175 768 | 323 | SINE (AluYa5) | 1 |
chr11:90 267 331 | 185 | LINE (L1P3) | 1 |
chr11:91 420 412 | 167 | SINE (AluYc) | 1 |
chr11:95 135 520 | 42 | SINE (Alu) | 1 |
chr11:95 320 834 | 49 | Retroposon (SVA_F) | 1 |
chr11:95 321 129 | 50 | Retroposon (SVA_F) | 1 |
chr11:98 770 105 | 208 | Retroposon (SVA_C) | 1 |
chr11:103 330 537 | 322 | SINE (AluYb8) | 1 |
chr11:104 194 493 | 204 | Retroposon (SVA_E) | 1 |
chr11:104 274 010 | 317 | SINE (AluYa5) | 1 |
chr11:106 173 850 | 314 | SINE (AluYa5) | 1 |
chr11:106 195 313 | 136 | SINE (AluSq) | 1 |
chr11:106 299 739 | 332 | SINE (AluY) | 1 |
chr11:111 211 677 | 42 | LINE (L1MC) | 1 |
chr11:116 130 885 | 191 | LTR (HERVIP10FH-int) | 1 |
chr11:119 253 538 | 265 | Retroposon (SVA_B) | 1 |
chr11:125 863 462 | 331 | Retroposon (SVA_F) | 1 |
chr11:127 871 039 | 289 | SINE (AluYb8) | 1 |
chr11:131 308 276 | 134 | SINE (AluSz) | 1 |
chr11:134 435 746 | 316 | LINE (L1HS) | 1 |
chr12:676 192 | 133 | SINE (AluYk2) | 1 |
chr12:1 543 322 | 423 | SINE (AluY) | 1 |
chr12:4 661 707 | 310 | SINE (AluYg6) | 1 |
chr12:5 660 425 | 298 | SINE (AluYd8) | 1 |
chr12:9 216 628 | 311 | SINE (AluY) | 1 |
chr12:9 349 116 | 79 | Retroposon (SVA_A) | 1 |
chr12:10 081 587 | 318 | SINE (AluY) | 1 |
chr12:10 525 737 | 326 | LTR (LTR57-int) | 1 |
chr12:14 020 934 | 310 | SINE (AluYa5) | 1 |
chr12:25 309 997 | 327 | SINE (AluY) | 1 |
chr12:26 784 936 | 38 | Retroposon (SVA_D) | 1 |
chr12:29 670 962 | 312 | SINE (AluYa5) | 1 |
chr12:31 923 477 | 315 | SINE (AluYg6) | 1 |
chr12:32 098 864 | 144 | SINE (AluSx) | 1 |
chr12:38 330 463 | 92 | Retroposon (SVA_C) | 1 |
chr12:48 332 467 | 196 | Retroposon (SVA_E) | 1 |
chr12:48 500 576 | 214 | Retroposon (SVA_F) | 1 |
chr12:49 788 823 | 85 | SINE (AluY) | 1 |
chr12:53 354 590 | 319 | SINE (AluY) | 1 |
chr12:56 558 296 | 304 | SINE (AluSx) | 1 |
chr12:57 665 178 | 155 | Retroposon (SVA_A) | 1 |
chr12:64 029 802 | 87 | SINE (AluSz6) | 1 |
chr12:64 204 038 | 84 | LINE (L1PA11) | 1 |
chr12:64 783 846 | 187 | SINE (AluSp) | 1 |
chr12:71 131 684 | 320 | SINE (AluYb9) | 1 |
chr12:71 725 885 | 27 | DNA (HSMAR2) | 1 |
chr12:75 537 304 | 316 | SINE (AluYg6) | 1 |
chr12:78 605 707 | 305 | SINE (AluYb8) | 1 |
chr12:83 692 332 | 322 | SINE (AluYb8) | 1 |
chr12:85 929 669 | 315 | SINE (AluYg6) | 1 |
chr12:86 811 026 | 109 | LINE (L1MD) | 1 |
chr12:87 477 038 | 320 | SINE (AluY) | 1 |
chr12:87 944 381 | 306 | SINE (AluYa5) | 1 |
chr12:92 118 740 | 28 | DNA (HSMAR2) | 1 |
chr12:94 868 527 | 218 | DNA (Tigger1) | 1 |
chr12:95 907 463 | 50 | Retroposon (SVA_F) | 1 |
chr12:100 294 427 | 196 | Retroposon (SVA_E) | 1 |
chr12:104 923 205 | 186 | SINE (AluYb9) | 1 |
chr12:106 209 872 | 284 | LINE (L1P3) | 1 |
chr12:125 036 157 | 161 | Retroposon (SVA_C) | 1 |
chr12:127 906 519 | 114 | LINE (L1M5) | 1 |
chr12:129 970 499 | 315 | SINE (AluY) | 1 |
chr12:132 789 701 | 56 | SINE (AluYc3) | 1 |
chr13:19 251 656 | 416 | LINE (L1PBa) | 1 |
chr13:19 779 535 | 47 | Retroposon (SVA_F) | 1 |
chr13:21 915 650 | 216 | LINE (L1HS) | 1 |
chr13:22 859 015 | 46 | Retroposon (SVA_F) | 1 |
chr13:26 242 116 | 315 | SINE (AluY) | 1 |
chr13:26 806 342 | 186 | Retroposon (SVA_A) | 1 |
chr13:37 215 551 | 165 | SINE (AluSx) | 1 |
chr13:39 789 556 | 27 | LTR (LTR10F) | 1 |
chr13:40 955 542 | 97 | Retroposon (SVA_F) | 1 |
chr13:41 881 714 | 126 | Retroposon (SVA_A) | 1 |
chr13:42 141 027 | 28 | LINE (L1PA5) | 1 |
chr13:42 476 441 | 73 | Retroposon (SVA_A) | 1 |
chr13:42 688 562 | 236 | SINE (AluY) | 1 |
chr13:46 521 202 | 318 | SINE (AluYa5) | 1 |
chr13:51 077 923 | 38 | Retroposon (SVA_C) | 1 |
chr13:55 612 425 | 323 | SINE (AluYk2) | 1 |
chr13:57 014 879 | 114 | SINE (AluY) | 1 |
chr13:58 046 916 | 290 | SINE (AluYb9) | 1 |
chr13:58 773 222 | 85 | LTR (LTR12C) | 1 |
chr13:58 822 744 | 315 | SINE (AluYg6) | 1 |
chr13:60 037 032 | 130 | LINE (L1MEd) | 1 |
chr13:62 146 931 | 309 | SINE (AluYa5) | 1 |
chr13:68 249 657 | 107 | SINE (AluJb) | 1 |
chr13:78 077 535 | 314 | SINE (AluYa5) | 1 |
chr13:78 697 449 | 316 | SINE (AluYm1) | 1 |
chr13:86 740 689 | 288 | SINE (AluYa5) | 1 |
chr13:87 043 983 | 255 | SINE (AluYe5) | 1 |
chr13:89 749 575 | 326 | SINE (AluYb8) | 1 |
chr13:90 291 100 | 57 | LTR (HERVP71A-int) | 1 |
chr13:91 609 018 | 322 | SINE (AluYg6) | 1 |
chr13:91 861 711 | 295 | SINE (AluYa5) | 1 |
chr13:92 538 791 | 212 | LINE (L1P3) | 1 |
chr13:93 176 152 | 301 | SINE (AluYa5) | 1 |
chr13:99 430 356 | 319 | SINE (AluY) | 1 |
chr13:105 062 568 | 288 | SINE (AluYb8) | 1 |
chr13:107 887 391 | 62 | LTR (MSTA) | 1 |
chr13:112 866 638 | 313 | SINE (AluYa5) | 1 |
chr13:112 937 994 | 217 | LTR (MER101) | 1 |
chr13:113 357 053 | 132 | SINE (AluSc) | 1 |
chr14:22 637 543 | 523 | Retroposon (SVA_E) | 1 |
chr14:24 473 723 | 118 | LTR (LTR12D) | 1 |
chr14:31 408 945 | 35 | SINE (AluYb8) | 1 |
chr14:40 110 466 | 324 | SINE (AluYa5) | 1 |
chr14:40 123 223 | 131 | SINE (AluYe5) | 1 |
chr14:45 389 772 | 227 | Retroposon (SVA_A) | 1 |
chr14:52 837 362 | 55 | LTR (MER51B) | 1 |
chr14:53 311 386 | 324 | SINE (AluYa5) | 1 |
chr14:59 987 435 | 326 | SINE (AluYb8) | 1 |
chr14:60 065 669 | 319 | SINE (AluYj4) | 1 |
chr14:60 108 770 | 313 | SINE (AluYa5) | 1 |
chr14:73 353 583 | 134 | SINE (AluSz6) | 1 |
chr14:89 608 202 | 143 | SINE (AluY) | 1 |
chr14:90 797 289 | 171 | SINE (AluYc) | 1 |
chr14:98 028 038 | 330 | SINE (AluYb8) | 1 |
chr14:98 678 770 | 53 | SINE (Alu) | 1 |
chr14:100 345 058 | 95 | Retroposon (SVA_F) | 1 |
chr14:101 358 105 | 70 | LTR (MLT1H) | 1 |
chr14:102 562 101 | 311 | SINE (AluY) | 1 |
chr14:105 111 338 | 223 | Retroposon (SVA_F) | 1 |
chr14:105 111 436 | 225 | Retroposon (SVA_F) | 1 |
chr15:23 103 992 | 316 | SINE (AluY) | 1 |
chr15:27 930 643 | 392 | LINE (L1HS) | 1 |
chr15:32 821 095 | 312 | SINE (AluYc) | 1 |
chr15:36 554 711 | 346 | SINE (AluYa5) | 1 |
chr15:44 209 805 | 288 | SINE (AluYb8) | 1 |
chr15:45 277 713 | 311 | SINE (AluYa5) | 1 |
chr15:45 290 055 | 31 | SINE (Alu) | 1 |
chr15:45 293 036 | 47 | Retroposon (SVA_F) | 1 |
chr15:47 279 101 | 87 | LINE (L1P1) | 1 |
chr15:56 541 721 | 296 | SINE (AluY) | 1 |
chr15:60 365 043 | 311 | SINE (AluYa5) | 1 |
chr15:60 924 332 | 322 | SINE (AluY) | 1 |
chr15:70 116 282 | 312 | SINE (AluY) | 1 |
chr15:71 757 533 | 132 | SINE (AluJo) | 1 |
chr15:71 769 278 | 124 | Retroposon (SVA_F) | 1 |
chr15:71 769 394 | 127 | Retroposon (SVA_F) | 1 |
chr15:72 347 195 | 319 | SINE (AluYa5) | 1 |
chr15:72 396 770 | 527 | Retroposon (SVA_F) | 1 |
chr15:75 481 597 | 400 | Retroposon (SVA_F) | 1 |
chr15:75 503 556 | 192 | Retroposon (SVA_D) | 1 |
chr15:76 230 513 | 82 | SINE (Alu) | 1 |
chr15:78 132 274 | 163 | SINE (AluSx4) | 1 |
chr15:80 355 807 | 93 | SINE (AluSp) | 1 |
chr15:80 370 223 | 315 | SINE (AluY) | 1 |
chr15:81 100 242 | 315 | SINE (AluYa5) | 1 |
chr15:84 854 228 | 317 | SINE (AluYa5) | 1 |
chr15:88 552 498 | 146 | Retroposon (SVA_F) | 1 |
chr15:88 941 916 | 118 | Retroposon (SVA_A) | 1 |
chr15:89 854 811 | 78 | Retroposon (SVA_F) | 1 |
chr15:94 621 784 | 305 | SINE (AluYk2) | 1 |
chr15:95 047 055 | 45 | LTR (LTR12_v) | 1 |
chr16:7 491 379 | 315 | SINE (AluYd8) | 1 |
chr16:8 368 176 | 311 | SINE (AluYa5) | 1 |
chr16:11 940 567 | 35 | SINE (AluSg4) | 1 |
chr16:21 227 729 | 317 | SINE (AluY) | 1 |
chr16:24 316 243 | 316 | SINE (AluYa5) | 1 |
chr16:31 105 127 | 143 | Retroposon (SVA_F) | 1 |
chr16:36 260 384 | 238 | LINE (L1HS) | 1 |
chr16:50 358 348 | 28 | SINE (AluJb) | 1 |
chr16:57 291 415 | 180 | SINE (AluYa5) | 1 |
chr16:65 448 283 | 314 | SINE (AluY) | 1 |
chr16:71 733 511 | 74 | SINE (AluSp) | 1 |
chr16:81 095 628 | 27 | SINE (Alu) | 1 |
chr16:82 131 072 | 300 | SINE (AluY) | 1 |
chr16:89 125 955 | 33 | LINE (L1MD) | 1 |
chr16:89 224 966 | 321 | SINE (AluY) | 1 |
chr17:598 874 | 394 | Retroposon (SVA_F) | 1 |
chr17:1 276 784 | 432 | SINE (AluSx) | 1 |
chr17:1 690 028 | 38 | Retroposon (SVA_D) | 1 |
chr17:2 448 174 | 125 | Retroposon (SVA_D) | 1 |
chr17:3 112 658 | 39 | Retroposon (SVA_D) | 1 |
chr17:3 113 047 | 39 | Retroposon (SVA_D) | 1 |
chr17:3 544 162 | 132 | SINE (AluSg) | 1 |
chr17:4 274 926 | 27 | SINE (Alu) | 1 |
chr17:4 411 686 | 257 | LINE (L1HS) | 1 |
chr17:5 069 184 | 326 | SINE (AluSx) | 1 |
chr17:16 095 665 | 104 | Retroposon (SVA_D) | 1 |
chr17:16 699 502 | 133 | SINE (AluYk2) | 1 |
chr17:18 888 657 | 351 | Retroposon (SVA_F) | 1 |
chr17:27 212 309 | 607 | Retroposon (SVA_F) | 1 |
chr17:28 604 067 | 97 | Retroposon (SVA_F) | 1 |
chr17:31 675 941 | 65 | LTR (LTR12) | 1 |
chr17:42 973 206 | 273 | Retroposon (SVA_F) | 1 |
chr17:44 181 115 | 253 | Retroposon (SVA_A) | 1 |
chr17:45 180 536 | 161 | SINE (AluYc) | 1 |
chr17:46 210 497 | 69 | LINE (CR1_Mam) | 1 |
chr17:47 325 026 | 266 | SINE (AluYa5) | 1 |
chr17:53 879 754 | 320 | SINE (AluYa5) | 1 |
chr17:56 870 207 | 295 | SINE (AluYh7) | 1 |
chr17:60 552 104 | 226 | Retroposon (SVA_F) | 1 |
chr17:75 194 906 | 334 | SINE (AluYb8) | 1 |
chr17:75 298 385 | 137 | SINE (AluSx3) | 1 |
chr17:76 610 520 | 40 | LTR (HERVH-int) | 1 |
chr18:1 235 778 | 322 | SINE (AluY) | 1 |
chr18:9 058 019 | 183 | LTR (LTR45B) | 1 |
chr18:9 401 404 | 322 | SINE (AluYa5) | 1 |
chr18:12 980 715 | 48 | Retroposon (SVA_F) | 1 |
chr18:15 779 866 | 217 | LINE (L1P1) | 1 |
chr18:15 780 000 | 123 | LINE (L1P1) | 1 |
chr18:22 626 725 | 44 | LINE (L1M4a1) | 1 |
chr18:28 271 206 | 349 | SINE (AluY) | 1 |
chr18:29 997 108 | 32 | LTR (THE1D-int) | 1 |
chr18:30 220 881 | 320 | SINE (AluY) | 1 |
chr18:38 932 567 | 316 | SINE (AluYa5) | 1 |
chr18:46 190 419 | 31 | SINE (Alu) | 1 |
chr18:48 997 461 | 113 | SINE (AluYb8) | 1 |
chr18:49 621 064 | 243 | SINE (AluSx) | 1 |
chr18:49 799 846 | 36 | Retroposon (SVA_D) | 1 |
chr18:53 961 960 | 84 | LINE (L1PA2) | 1 |
chr18:54 236 358 | 166 | LINE (L1HS) | 1 |
chr18:57 632 999 | 409 | Retroposon (SVA_F) | 1 |
chr18:64 608 891 | 176 | Retroposon (SVA_F) | 1 |
chr18:64 609 239 | 96 | Retroposon (SVA_F) | 1 |
chr18:65 820 032 | 317 | SINE (AluY) | 1 |
chr18:68 731 922 | 315 | SINE (AluYk2) | 1 |
chr18:71 476 487 | 53 | LINE (L1P3b) | 1 |
chr18:76 241 968 | 323 | SINE (AluYi6_4d) | 1 |
chr18:76 851 079 | 311 | SINE (AluYk2) | 1 |
chr18:78 280 919 | 132 | LINE (L1P4) | 1 |
chr19:1 923 899 | 133 | SINE (AluSx) | 1 |
chr19:2 383 641 | 308 | SINE (AluY) | 1 |
chr19:4 965 572 | 165 | SINE (AluSz6) | 1 |
chr19:7 102 802 | 167 | SINE (AluSx) | 1 |
chr19:9 066 899 | 310 | SINE (AluSx) | 1 |
chr19:10 715 006 | 135 | SINE (AluSz) | 1 |
chr19:14 934 350 | 310 | SINE (AluYa5) | 1 |
chr19:15 965 984 | 316 | SINE (AluY) | 1 |
chr19:20 149 557 | 148 | Retroposon (SVA_D) | 1 |
chr19:22 926 686 | 174 | Retroposon (SVA_A) | 1 |
chr19:22 927 102 | 46 | Retroposon (SVA_F) | 1 |
chr19:23 734 248 | 314 | SINE (AluYb8) | 1 |
chr19:23 768 603 | 320 | SINE (AluYa5) | 1 |
chr19:28 732 919 | 598 | LINE (L1P4) | 1 |
chr19:39 905 477 | 311 | SINE (AluSx) | 1 |
chr19:40 648 236 | 98 | Retroposon (SVA_F) | 1 |
chr19:47 926 362 | 315 | LINE (L1P4) | 1 |
chr19:50 585 456 | 100 | SINE (AluJb) | 1 |
chr19:52 720 418 | 73 | Retroposon (SVA_A) | 1 |
chr19:52 720 518 | 74 | Retroposon (SVA_A) | 1 |
chr20:4 033 152 | 54 | Retroposon (SVA_F) | 1 |
chr20:6 665 190 | 63 | DNA (MER33) | 1 |
chr20:9 641 462 | 118 | LTR (LTR12C) | 1 |
chr20:16 850 145 | 325 | SINE (AluYa5) | 1 |
chr20:16 894 383 | 343 | SINE (AluY) | 1 |
chr20:18 689 891 | 175 | SINE (AluJb) | 1 |
chr20:28 790 008 | 45 | LINE (L1P1) | 1 |
chr20:29 307 454 | 180 | SINE (AluSq) | 1 |
chr20:29 316 550 | 128 | LTR (LTR5A) | 1 |
chr20:29 802 581 | 813 | LTR (PRIMA41-int) | 1 |
chr20:35 564 371 | 148 | SINE (AluSg) | 1 |
chr20:38 461 434 | 47 | Retroposon (SVA_F) | 1 |
chr20:39 582 022 | 310 | SINE (AluYb8) | 1 |
chr20:44 297 116 | 37 | SINE (AluSp) | 1 |
chr20:45 645 652 | 219 | Retroposon (SVA_F) | 1 |
chr20:47 525 869 | 146 | Retroposon (SVA_E) | 1 |
chr20:50 366 200 | 35 | SINE (Alu) | 1 |
chr20:55 145 299 | 315 | SINE (AluYa5) | 1 |
chr20:60 439 006 | 74 | LINE (L1MD) | 1 |
chr21:5 216 449 | 221 | LINE (L1M3) | 1 |
chr21:7 101 127 | 298 | LTR (LTR43-int) | 1 |
chr21:10 508 068 | 56 | LINE (L1M3) | 1 |
chr21:19 952 209 | 323 | SINE (AluYa5) | 1 |
chr21:20 142 805 | 314 | SINE (AluY) | 1 |
chr21:24 981 910 | 322 | SINE (AluY) | 1 |
chr21:25 125 106 | 318 | SINE (AluYk2) | 1 |
chr21:27 188 703 | 320 | SINE (AluYa5) | 1 |
chr21:32 482 933 | 67 | SINE (AluJo) | 1 |
chr21:34 011 406 | 311 | SINE (AluYa5) | 1 |
chr21:35 865 629 | 332 | SINE (AluYk2) | 1 |
chr21:37 685 531 | 316 | SINE (AluYa5) | 1 |
chr21:42 965 782 | 319 | SINE (AluY) | 1 |
chr21:44 468 497 | 135 | SINE (AluSz) | 1 |
chr22:15 830 534 | 136 | SINE (AluSx) | 1 |
chr22:17 567 654 | 357 | SINE (AluYb8) | 1 |
chr22:21 883 573 | 48 | Retroposon (SVA_F) | 1 |
chr22:22 644 845 | 315 | SINE (AluSx) | 1 |
chr22:25 277 728 | 46 | Retroposon (SVA_F) | 1 |
chr22:28 380 048 | 320 | SINE (AluYa5) | 1 |
chr22:30 597 428 | 159 | LTR (LTR12C) | 1 |
chr22:32 682 040 | 149 | LINE (L2a) | 1 |
chr22:34 034 609 | 325 | SINE (AluY) | 1 |
chr22:40 501 145 | 128 | Retroposon (SVA_F) | 1 |
chr22:40 744 913 | 174 | Retroposon (SVA_F) | 1 |
chr22:40 745 453 | 122 | Retroposon (SVA_F) | 1 |
chr22:41 294 871 | 382 | Retroposon (SVA_F) | 1 |
chr22:41 552 573 | 39 | SINE (AluJb) | 1 |
chr22:41 631 584 | 39 | Retroposon (SVA_C) | 1 |
chr22:42 818 815 | 313 | SINE (AluYa5) | 1 |
chr22:46 509 527 | 44 | DNA (MER20) | 1 |
chr22:49 669 732 | 150 | LTR (LTR12C) | 1 |
chrX:1 057 561 | 80 | SINE (AluSg) | 1 |
chrX:1 304 189 | 333 | SINE (AluSx) | 1 |
chrX:8 978 447 | 88 | LINE (L1P4) | 1 |
chrX:16 964 930 | 124 | Retroposon (SVA_F) | 1 |
chrX:24 709 079 | 128 | Retroposon (SVA_F) | 1 |
chrX:27 458 491 | 124 | Retroposon (SVA_A) | 1 |
chrX:34 249 205 | 394 | LINE (L1P1) | 1 |
chrX:40 211 095 | 336 | Retroposon (SVA_E) | 1 |
chrX:42 285 660 | 395 | Retroposon (SVA_E) | 1 |
chrX:45 040 273 | 164 | Retroposon (SVA_F) | 1 |
chrX:52 729 421 | 97 | LINE (L1PA4) | 1 |
chrX:53 772 507 | 127 | Retroposon (SVA_F) | 1 |
chrX:65 457 302 | 346 | Retroposon (SVA_F) | 1 |
chrX:66 519 345 | 52 | LINE (L1PREC2) | 1 |
chrX:70 350 008 | 115 | Retroposon (SVA_D) | 1 |
chrX:71 676 857 | 35 | Retroposon (SVA_A) | 1 |
chrX:75 334 743 | 38 | Retroposon (SVA_B) | 1 |
chrX:77 354 180 | 321 | SINE (AluYa5) | 1 |
chrX:78 265 511 | 223 | Retroposon (SVA_F) | 1 |
chrX:79 301 630 | 66 | LTR (MER50B) | 1 |
chrX:80 215 123 | 116 | Retroposon (SVA_A) | 1 |
chrX:84 754 818 | 120 | LINE (L1MC) | 1 |
chrX:85 754 473 | 49 | LINE (L1P1) | 1 |
chrX:86 872 340 | 117 | LTR (HERVL-int) | 1 |
chrX:89 128 143 | 264 | LINE (L1PA12) | 1 |
chrX:89 740 949 | 136 | SINE (AluYc) | 1 |
chrX:92 170 920 | 134 | SINE (AluSq) | 1 |
chrX:104 079 600 | 37 | LINE (L1PREC2) | 1 |
chrX:107 501 516 | 133 | SINE (AluYb8) | 1 |
chrX:115 436 029 | 295 | SINE (AluYa5) | 1 |
chrX:120 393 985 | 308 | SINE (AluYa5) | 1 |
chrX:120 758 975 | 216 | LINE (L1HS) | 1 |
chrX:124 128 744 | 223 | Retroposon (SVA_F) | 1 |
chrX:137 267 661 | 334 | SINE (AluY) | 1 |
chrX:138 269 886 | 50 | LTR (LTR7) | 1 |
chrX:146 808 266 | 323 | SINE (AluYb8) | 1 |
chrX:146 816 231 | 320 | SINE (AluYb8) | 1 |
chrY:11 349 044 | 102 | SINE (AluSq2) | 1 |
chrY:11 384 811 | 209 | SINE (AluYa5) | 1 |
chrY:56 867 594 | 131 | SINE (AluSc) | 1 |
Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.
This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.
Repeat | Repeat | Unique | Total | Total |
|---|---|---|---|---|
DNA | hAT | 2 | 4 | 4 |
TcMar | 6 | 12 | 12 | |
LINE | CR1 | 3 | 6 | 6 |
L1 | 268 | 527 | 519 | |
L2 | 9 | 18 | 18 | |
LTR | ERV1 | 97 | 184 | 170 |
ERVK | 15 | 30 | 28 | |
ERVL | 35 | 69 | 65 | |
Retroposon | SVA | 394 | 757 | 665 |
SINE | Alu | 1 523 | 3 028 | 3 006 |
MIR | 3 | 6 | 6 | |
Total | - | 2 355 | 4 641 | 4 499 |
Name | Unique | Total | Total |
|---|---|---|---|
SVA A | 48 | 95 | 85 |
SVA B | 15 | 30 | 27 |
SVA C | 16 | 32 | 25 |
SVA D | 19 | 38 | 37 |
SVA E | 61 | 116 | 101 |
SVA F | 232 | 440 | 384 |
SVA F1 | 3 | 6 | 6 |
Total | 394 | 757 | 665 |
Name | Unique | Total | Total |
|---|---|---|---|
Alu | 10 | 20 | 18 |
AluJb | 33 | 64 | 61 |
AluJo | 2 | 4 | 4 |
AluJr4 | 1 | 2 | 2 |
AluSc | 7 | 13 | 12 |
AluSc8 | 5 | 10 | 10 |
AluSg | 9 | 18 | 17 |
AluSg4 | 4 | 8 | 8 |
AluSg7 | 1 | 2 | 2 |
AluSp | 10 | 20 | 20 |
AluSq | 10 | 20 | 19 |
AluSq2 | 6 | 12 | 12 |
AluSx | 60 | 117 | 112 |
AluSx1 | 1 | 2 | 2 |
AluSx3 | 7 | 14 | 14 |
AluSx4 | 5 | 10 | 9 |
AluSz | 7 | 14 | 14 |
AluSz6 | 4 | 8 | 7 |
AluY | 372 | 741 | 736 |
AluYa5 | 440 | 879 | 879 |
AluYa8 | 3 | 6 | 6 |
AluYb8 | 275 | 545 | 545 |
AluYb9 | 37 | 74 | 74 |
AluYc | 24 | 48 | 48 |
AluYc3 | 1 | 2 | 1 |
AluYd8 | 11 | 22 | 22 |
AluYe5 | 47 | 94 | 94 |
AluYe6 | 1 | 2 | 2 |
AluYf1 | 4 | 8 | 8 |
AluYg6 | 34 | 68 | 68 |
AluYh7 | 5 | 10 | 10 |
AluYi6 | 5 | 10 | 10 |
AluYi6 4d | 3 | 6 | 6 |
AluYj4 | 4 | 8 | 8 |
AluYk11 | 1 | 2 | 2 |
AluYk12 | 4 | 8 | 8 |
AluYk2 | 53 | 105 | 105 |
AluYk3 | 2 | 4 | 4 |
AluYk4 | 5 | 10 | 10 |
AluYm1 | 2 | 4 | 4 |
FLAM C | 3 | 6 | 6 |
FRAM | 5 | 8 | 7 |
Total | 1 523 | 3 028 | 3 006 |
Name | Unique | Total | Total |
|---|---|---|---|
L1HS | 108 | 214 | 213 |
L1M1 | 7 | 14 | 14 |
L1M2 | 4 | 8 | 8 |
L1M2a1 | 1 | 2 | 2 |
L1M3 | 6 | 12 | 12 |
L1M3de | 1 | 2 | 2 |
L1M4 | 4 | 7 | 6 |
L1M4b | 1 | 2 | 2 |
L1M4c | 1 | 2 | 2 |
L1M5 | 5 | 10 | 10 |
L1MA4 | 1 | 2 | 2 |
L1MB3 | 2 | 4 | 3 |
L1MB5 | 2 | 4 | 4 |
L1MB8 | 1 | 2 | 2 |
L1MC | 2 | 4 | 4 |
L1MC1 | 1 | 2 | 2 |
L1MC3 | 1 | 2 | 2 |
L1MC4 | 2 | 4 | 4 |
L1MC4a | 1 | 2 | 2 |
L1MC5 | 2 | 4 | 4 |
L1MCa | 2 | 4 | 4 |
L1MD | 2 | 4 | 4 |
L1MD3 | 1 | 2 | 2 |
L1ME1 | 1 | 2 | 2 |
L1ME2z | 1 | 2 | 2 |
L1MEc | 1 | 2 | 2 |
L1MEd | 1 | 2 | 2 |
L1MEg | 2 | 4 | 4 |
L1P1 | 22 | 43 | 42 |
L1P2 | 9 | 17 | 17 |
L1P3 | 12 | 23 | 21 |
L1P3b | 1 | 2 | 2 |
L1P4 | 9 | 17 | 16 |
L1P4e | 1 | 2 | 2 |
L1P5 | 5 | 9 | 9 |
L1PA10 | 2 | 4 | 4 |
L1PA11 | 1 | 2 | 2 |
L1PA12 | 2 | 4 | 4 |
L1PA15-16 | 1 | 2 | 2 |
L1PA16 | 2 | 4 | 4 |
L1PA2 | 7 | 14 | 14 |
L1PA3 | 2 | 4 | 4 |
L1PA4 | 5 | 10 | 10 |
L1PA6 | 2 | 4 | 4 |
L1PA7 | 3 | 6 | 6 |
L1PA8 | 1 | 1 | 1 |
L1PA8A | 1 | 2 | 2 |
L1PB | 3 | 6 | 6 |
L1PB1 | 3 | 6 | 6 |
L1PBa | 2 | 4 | 4 |
L1PBb | 1 | 2 | 2 |
L1PREC2 | 7 | 14 | 13 |
Total | 268 | 527 | 519 |
Position | Length | Type | Gene | Annotation | Occurrences |
|---|---|---|---|---|---|
chr1:1 477 853 | 133 | SINE (Alu) | ATAD3B | Promoter | 2 |
chr1:1 477 853 | 133 | SINE (Alu) | ATAD3B | Intron | 2 |
chr1:1 993 703 | 145 | SINE (Alu) | CFAP74 | Intron | 2 |
chr1:5 874 227 | 283 | SINE (Alu) | NPHP4 | Promoter | 2 |
chr1:5 874 227 | 283 | SINE (Alu) | NPHP4 | Intron | 2 |
chr1:7 018 123 | 182 | SINE (Alu) | CAMTA1 | Intron | 2 |
chr1:7 114 731 | 48 | LTR (ERVL) | CAMTA1 | Intron | 1 |
chr1:8 502 132 | 594 | Retroposon (SVA) | RERE | Intron | 1 |
chr1:9 170 366 | 317 | SINE (Alu) | MIR34AHG | Intron | 2 |
chr1:9 968 550 | 139 | SINE (Alu) | NMNAT1 | Intron | 2 |
chr1:16 311 086 | 147 | SINE (Alu) | FBXO42 | Intron | 2 |
chr1:16 424 204 | 134 | SINE (Alu) | SPATA21 | Intron | 2 |
chr1:16 868 226 | 318 | SINE (Alu) | CROCC | Intron | 2 |
chr1:21 166 095 | 315 | SINE (Alu) | EIF4G3 | Intron | 2 |
chr1:24 634 836 | 312 | SINE (Alu) | SRRM1 | Intron | 2 |
chr1:28 994 949 | 313 | SINE (Alu) | EPB41 | Intron | 2 |
chr1:29 100 312 | 322 | SINE (Alu) | EPB41 | Intron | 2 |
chr1:33 052 502 | 101 | Retroposon (SVA) | AK2 | Intron | 1 |
chr1:37 967 098 | 314 | SINE (Alu) | SF3A3 | Intron | 2 |
chr1:38 485 066 | 75 | SINE (Alu) | LINC01685 | Intron | 2 |
chr1:39 211 989 | 316 | SINE (Alu) | MACF1 | Intron | 2 |
chr1:39 234 551 | 520 | Retroposon (SVA) | MACF1 | Intron | 1 |
chr1:39 234 641 | 488 | Retroposon (SVA) | MACF1 | Intron | 1 |
chr1:41 924 632 | 326 | SINE (Alu) | HIVEP3 | Intron | 2 |
chr1:42 018 288 | 1 497 | LINE (L1) | HIVEP3 | Intron | 2 |
chr1:44 876 572 | 397 | Retroposon (SVA) | EIF2B3 | Promoter | 2 |
chr1:44 876 572 | 397 | Retroposon (SVA) | EIF2B3 | Intron | 2 |
chr1:45 223 068 | 215 | Retroposon (SVA) | ZSWIM5 | Intron | 2 |
chr1:50 446 975 | 337 | SINE (Alu) | FAF1 | Intron | 2 |
chr1:51 711 474 | 317 | Retroposon (SVA) | OSBPL9 | Intron | 1 |
chr1:52 869 959 | 98 | Retroposon (SVA) | ZYG11A | Intron | 2 |
chr1:54 561 764 | 176 | Retroposon (SVA) | ACOT11 | Intron | 2 |
chr1:57 606 184 | 211 | SINE (Alu) | DAB1 | Intron | 2 |
chr1:58 272 333 | 270 | SINE (Alu) | DAB1 | Intron | 2 |
chr1:58 739 631 | 307 | SINE (Alu) | LOC112268263 | Intron | 2 |
chr1:62 996 278 | 318 | SINE (Alu) | LINC01739 | Intron | 2 |
chr1:63 473 989 | 115 | Retroposon (SVA) | ITGB3BP | Intron | 2 |
chr1:64 492 377 | 342 | SINE (Alu) | CACHD1 | Intron | 2 |
chr1:65 590 242 | 316 | SINE (Alu) | LEPR | Intron | 2 |
chr1:69 625 372 | 326 | SINE (Alu) | LRRC7 | Intron | 2 |
chr1:70 062 872 | 331 | SINE (Alu) | LRRC7 | Intron | 2 |
chr1:72 173 321 | 316 | SINE (Alu) | NEGR1 | Intron | 2 |
chr1:74 727 204 | 3 702 | LINE (L1) | CRYZ | Intron | 2 |
chr1:77 168 628 | 307 | SINE (Alu) | PIGK | Intron | 2 |
chr1:79 116 389 | 307 | SINE (Alu) | ADGRL4 | Intron | 2 |
chr1:81 846 355 | 322 | SINE (Alu) | ADGRL2 | Intron | 2 |
chr1:83 144 049 | 1 737 | LINE (L1) | LINC01362 | Intron | 2 |
chr1:87 825 866 | 120 | SINE (Alu) | LOC107985518 | Intron | 2 |
chr1:89 797 987 | 79 | Retroposon (SVA) | LRRC8D | Intron | 1 |
chr1:89 905 000 | 269 | SINE (Alu) | LRRC8D | Intron | 2 |
chr1:90 534 118 | 318 | SINE (Alu) | LINC02787 | Promoter | 2 |
chr1:91 768 794 | 332 | SINE (Alu) | TGFBR3 | Intron | 2 |
chr1:92 701 961 | 323 | SINE (Alu) | EVI5 | Intron | 2 |
chr1:97 252 071 | 324 | SINE (Alu) | DPYD-AS1 | Intron | 2 |
chr1:99 144 969 | 299 | SINE (Alu) | PLPPR5-AS1 | Intron | 2 |
chr1:107 599 843 | 308 | SINE (Alu) | VAV3 | Intron | 2 |
chr1:109 177 355 | 76 | Retroposon (SVA) | ELAPOR1 | Intron | 2 |
chr1:111 560 471 | 295 | SINE (Alu) | RAP1A | Intron | 2 |
chr1:112 193 371 | 328 | SINE (Alu) | LINC02884 | Intron | 2 |
chr1:112 449 371 | 315 | SINE (Alu) | CTTNBP2NL | Intron | 2 |
chr1:112 847 902 | 314 | SINE (Alu) | LINC01356 | Intron | 2 |
chr1:147 467 282 | 73 | LINE (L1) | LINC00624 | Intron | 1 |
chr1:147 488 599 | 103 | SINE (MIR) | LINC00624 | Intron | 2 |
chr1:147 653 127 | 306 | SINE (Alu) | ACP6 | Intron | 2 |
chr1:147 949 446 | 117 | Retroposon (SVA) | GPR89B | Intron | 2 |
chr1:150 227 792 | 277 | SINE (Alu) | ANP32E | Intron | 2 |
chr1:150 990 241 | 336 | SINE (Alu) | ANXA9 | Intron | 2 |
chr1:151 769 291 | 90 | Retroposon (SVA) | OAZ3 | Intron | 2 |
chr1:155 700 905 | 347 | Retroposon (SVA) | DAP3 | Intron | 2 |
chr1:155 954 588 | 320 | SINE (Alu) | ARHGEF2 | Intron | 2 |
chr1:156 328 044 | 140 | Retroposon (SVA) | CCT3 | Intron | 2 |
chr1:162 267 455 | 312 | SINE (Alu) | NOS1AP | Intron | 2 |
chr1:162 293 222 | 319 | SINE (Alu) | NOS1AP | Intron | 2 |
chr1:162 791 517 | 316 | SINE (Alu) | HSD17B7 | Intron | 2 |
chr1:163 247 451 | 333 | SINE (Alu) | RGS5 | Intron | 2 |
chr1:163 344 640 | 328 | SINE (Alu) | NUF2 | Intron | 2 |
chr1:165 892 145 | 2 352 | Retroposon (SVA) | UCK2 | Promoter | 2 |
chr1:165 892 145 | 2 352 | Retroposon (SVA) | UCK2 | Intron | 2 |
chr1:167 743 624 | 317 | SINE (Alu) | MPZL1 | Intron | 2 |
chr1:169 256 810 | 126 | LINE (L1) | ATP1B1 | Intron | 2 |
chr1:169 555 627 | 619 | LINE (L1) | F5 | Intron | 2 |
chr1:169 993 600 | 163 | SINE (Alu) | KIFAP3 | Intron | 2 |
chr1:172 571 914 | 354 | Retroposon (SVA) | SUCO | Intron | 1 |
chr1:179 522 822 | 352 | SINE (Alu) | AXDND1 | Intron | 2 |
chr1:181 619 208 | 322 | SINE (Alu) | CACNA1E | Intron | 2 |
chr1:181 632 139 | 282 | SINE (Alu) | CACNA1E | Intron | 2 |
chr1:182 451 704 | 323 | SINE (Alu) | RGSL1 | Intron | 2 |
chr1:184 000 538 | 3 795 | LINE (L1) | COLGALT2 | Intron | 2 |
chr1:192 857 342 | 76 | Retroposon (SVA) | LOC105371665 | Intron | 2 |
chr1:192 857 702 | 175 | Retroposon (SVA) | LOC105371665 | Intron | 2 |
chr1:196 792 226 | 323 | SINE (Alu) | CFH | Intron | 2 |
chr1:197 042 727 | 286 | SINE (Alu) | F13B | Intron | 2 |
chr1:198 500 207 | 319 | SINE (Alu) | LOC105371677 | Intron | 2 |
chr1:198 846 183 | 283 | SINE (Alu) | MIR181A1HG | Intron | 2 |
chr1:199 360 533 | 320 | SINE (Alu) | LINC02789 | Intron | 2 |
chr1:204 269 326 | 329 | SINE (Alu) | PLEKHA6 | Intron | 2 |
chr1:204 375 912 | 329 | SINE (Alu) | PLEKHA6 | Intron | 2 |
chr1:212 592 491 | 317 | SINE (Alu) | ATF3 | Intron | 2 |
chr1:212 801 295 | 2 410 | Retroposon (SVA) | TATDN3 | Intron | 2 |
chr1:219 010 830 | 100 | LINE (L1) | LYPLAL1-DT | Intron | 2 |
chr1:222 697 340 | 328 | SINE (Alu) | AIDA | Intron | 2 |
chr1:227 275 238 | 324 | SINE (Alu) | CDC42BPA | Intron | 2 |
chr1:227 314 750 | 135 | SINE (Alu) | CDC42BPA | Intron | 2 |
chr1:227 414 560 | 315 | SINE (Alu) | LINC01641 | Intron | 2 |
chr1:230 949 403 | 302 | SINE (Alu) | TTC13 | Intron | 2 |
chr1:233 206 358 | 314 | SINE (Alu) | PCNX2 | Intron | 2 |
chr1:234 669 965 | 326 | SINE (Alu) | LOC105373209 | Intron | 2 |
chr1:235 309 350 | 85 | Retroposon (SVA) | ARID4B | Intron | 2 |
chr1:235 635 569 | 167 | LTR (ERVL) | GNG4 | Intron | 2 |
chr1:237 286 555 | 203 | LINE (L1) | RYR2 | Intron | 2 |
chr1:237 405 893 | 319 | SINE (Alu) | RYR2 | Intron | 2 |
chr1:239 616 844 | 312 | SINE (Alu) | CHRM3 | Intron | 2 |
chr1:240 060 352 | 54 | SINE (Alu) | FMN2 | Intron | 2 |
chr1:241 326 641 | 326 | SINE (Alu) | RGS7 | Intron | 2 |
chr1:242 148 258 | 6 041 | LINE (L1) | PLD5 | Intron | 2 |
chr1:245 826 009 | 324 | SINE (Alu) | SMYD3 | Intron | 2 |
chr1:246 056 659 | 318 | SINE (Alu) | SMYD3 | Intron | 2 |
chr1:246 243 399 | 331 | SINE (Alu) | SMYD3 | Intron | 2 |
chr1:246 402 366 | 165 | SINE (Alu) | SMYD3 | Intron | 2 |
chr1:246 429 027 | 317 | SINE (Alu) | SMYD3 | Intron | 2 |
chr1:248 911 737 | 126 | Retroposon (SVA) | PGBD2 | Intron | 2 |
chr1:433 445 | 76 | LINE (L1) | LOC112268260 | Intron | 1 |
chr1:710 578 | 318 | SINE (Alu) | OR4F16 | Intron | 2 |
chr2:1 199 165 | 306 | SINE (Alu) | SNTG2 | Intron | 2 |
chr2:1 467 941 | 329 | SINE (Alu) | TPO | Intron | 2 |
chr2:2 295 538 | 173 | LTR (ERV1) | MYT1L | Intron | 1 |
chr2:11 213 564 | 311 | SINE (Alu) | ROCK2 | Intron | 2 |
chr2:11 286 233 | 324 | SINE (Alu) | ROCK2 | Intron | 2 |
chr2:15 379 414 | 312 | SINE (Alu) | NBAS | Intron | 2 |
chr2:15 541 819 | 152 | Retroposon (SVA) | NBAS | Intron | 2 |
chr2:21 573 937 | 297 | SINE (Alu) | LOC105374320 | Intron | 2 |
chr2:24 255 675 | 122 | SINE (Alu) | ITSN2 | Intron | 2 |
chr2:26 251 065 | 328 | SINE (Alu) | HADHB | Intron | 2 |
chr2:27 539 883 | 126 | Retroposon (SVA) | C2orf16 | Intron | 2 |
chr2:31 336 815 | 310 | SINE (Alu) | XDH | Intron | 2 |
chr2:36 777 087 | 308 | SINE (Alu) | VIT | Intron | 2 |
chr2:39 079 154 | 61 | LINE (L1) | SOS1 | Intron | 2 |
chr2:39 088 182 | 316 | SINE (Alu) | SOS1 | Intron | 2 |
chr2:43 298 031 | 356 | Retroposon (SVA) | THADA | Intron | 2 |
chr2:44 588 991 | 259 | Retroposon (SVA) | CAMKMT | Intron | 1 |
chr2:44 588 991 | 536 | Retroposon (SVA) | CAMKMT | Intron | 2 |
chr2:44 598 695 | 316 | SINE (Alu) | CAMKMT | Intron | 2 |
chr2:45 969 044 | 332 | SINE (Alu) | PRKCE | Intron | 2 |
chr2:46 701 810 | 298 | SINE (Alu) | LINC01118 | Intron | 2 |
chr2:47 092 140 | 323 | SINE (Alu) | STPG4 | Intron | 2 |
chr2:50 375 490 | 328 | SINE (Alu) | NRXN1 | Intron | 2 |
chr2:59 399 864 | 330 | SINE (Alu) | LOC105374754 | Intron | 2 |
chr2:62 139 878 | 168 | SINE (Alu) | COMMD1 | Intron | 1 |
chr2:63 552 086 | 325 | SINE (Alu) | WDPCP | Intron | 2 |
chr2:65 106 650 | 304 | SINE (Alu) | RAB1A | Intron | 2 |
chr2:65 600 689 | 1 341 | Retroposon (SVA) | LINC02934 | Intron | 1 |
chr2:66 431 844 | 325 | SINE (Alu) | MEIS1-AS3 | Intron | 2 |
chr2:69 517 524 | 317 | SINE (Alu) | AAK1 | Intron | 2 |
chr2:71 479 155 | 181 | SINE (Alu) | DYSF | Intron | 2 |
chr2:73 898 351 | 317 | SINE (Alu) | ACTG2 | Intron | 2 |
chr2:75 160 770 | 314 | SINE (Alu) | LOC105374811 | Intron | 2 |
chr2:80 541 884 | 269 | SINE (Alu) | CTNNA2 | Intron | 2 |
chr2:87 180 576 | 493 | LINE (L1) | LOC102724642 | Intron | 2 |
chr2:104 078 052 | 73 | LTR (ERV1) | LINC01965 | Intron | 2 |
chr2:105 836 109 | 316 | SINE (Alu) | NCK2 | Intron | 2 |
chr2:111 283 808 | 329 | SINE (Alu) | MIR4435-2HG | Intron | 2 |
chr2:111 689 844 | 327 | SINE (Alu) | MIR4435-2HG | Intron | 2 |
chr2:111 780 870 | 73 | LINE (L1) | ANAPC1 | Promoter | 1 |
chr2:111 780 870 | 73 | LINE (L1) | ANAPC1 | Intron | 1 |
chr2:111 958 964 | 325 | SINE (Alu) | MERTK | Intron | 2 |
chr2:113 395 042 | 127 | Retroposon (SVA) | LINC02966 | Intron | 2 |
chr2:113 464 500 | 316 | SINE (Alu) | ZNG1B | Intron | 2 |
chr2:117 871 796 | 101 | LINE (L1) | LOC101929908 | Intron | 2 |
chr2:118 042 430 | 74 | LINE (L1) | LOC102723413 | Intron | 2 |
chr2:119 843 893 | 642 | Retroposon (SVA) | PTPN4 | Intron | 1 |
chr2:119 844 107 | 218 | Retroposon (SVA) | PTPN4 | Intron | 1 |
chr2:122 573 068 | 317 | SINE (Alu) | LOC105373595 | Intron | 2 |
chr2:122 762 574 | 312 | SINE (Alu) | LOC105373595 | Intron | 2 |
chr2:127 881 317 | 326 | SINE (Alu) | AMMECR1L | Intron | 2 |
chr2:127 981 347 | 120 | LTR (ERV1) | SAP130 | Intron | 2 |
chr2:131 765 910 | 259 | SINE (Alu) | C2orf27A | Intron | 2 |
chr2:133 158 922 | 325 | SINE (Alu) | NCKAP5 | Intron | 2 |
chr2:140 776 485 | 328 | SINE (Alu) | LRP1B | Intron | 2 |
chr2:147 892 493 | 299 | SINE (Alu) | ACVR2A | Intron | 2 |
chr2:152 160 907 | 174 | Retroposon (SVA) | STAM2 | Intron | 2 |
chr2:152 391 750 | 328 | SINE (Alu) | FMNL2 | Intron | 2 |
chr2:153 896 067 | 331 | SINE (Alu) | GALNT13 | Intron | 2 |
chr2:158 426 108 | 329 | SINE (Alu) | CCDC148 | Intron | 2 |
chr2:159 251 110 | 156 | SINE (Alu) | WDSUB1 | Intron | 2 |
chr2:159 519 808 | 158 | SINE (Alu) | BAZ2B | Intron | 2 |
chr2:165 037 524 | 82 | LINE (L1) | LOC101929633 | Intron | 2 |
chr2:169 179 811 | 312 | SINE (Alu) | LRP2 | Intron | 2 |
chr2:171 866 581 | 402 | Retroposon (SVA) | SLC25A12 | Intron | 1 |
chr2:172 700 342 | 116 | Retroposon (SVA) | RAPGEF4-AS1 | Intron | 2 |
chr2:174 087 490 | 2 687 | Retroposon (SVA) | OLA1 | Intron | 2 |
chr2:174 871 203 | 318 | SINE (Alu) | CHN1 | Intron | 2 |
chr2:177 453 984 | 333 | SINE (Alu) | AGPS | Intron | 2 |
chr2:177 486 724 | 340 | SINE (Alu) | AGPS | Intron | 2 |
chr2:188 298 290 | 302 | SINE (Alu) | GULP1 | Intron | 2 |
chr2:190 430 797 | 94 | Retroposon (SVA) | MFSD6 | Intron | 1 |
chr2:191 398 198 | 298 | Retroposon (SVA) | MYO1B | Intron | 2 |
chr2:191 975 312 | 330 | SINE (Alu) | CAVIN2-AS1 | Intron | 2 |
chr2:197 898 723 | 311 | SINE (Alu) | PLCL1 | Intron | 2 |
chr2:201 766 721 | 319 | SINE (Alu) | ALS2 | Intron | 2 |
chr2:202 534 992 | 49 | Retroposon (SVA) | BMPR2 | Intron | 1 |
chr2:207 607 676 | 320 | SINE (Alu) | METTL21A | Intron | 2 |
chr2:211 843 606 | 314 | SINE (Alu) | ERBB4 | Intron | 2 |
chr2:212 060 586 | 330 | SINE (Alu) | ERBB4 | Intron | 2 |
chr2:214 336 906 | 323 | SINE (Alu) | SPAG16 | Intron | 2 |
chr2:214 835 361 | 413 | Retroposon (SVA) | SNHG31 | Intron | 1 |
chr2:214 835 480 | 425 | Retroposon (SVA) | SNHG31 | Intron | 1 |
chr2:215 683 694 | 326 | SINE (Alu) | LOC102724861 | Intron | 2 |
chr2:217 316 033 | 304 | SINE (Alu) | DIRC3-AS1 | Intron | 2 |
chr2:218 333 969 | 321 | SINE (Alu) | PNKD | Intron | 2 |
chr2:218 711 869 | 327 | SINE (Alu) | TTLL4 | Intron | 2 |
chr2:222 896 866 | 77 | Retroposon (SVA) | ACSL3 | Intron | 2 |
chr2:230 937 442 | 216 | LTR (ERV1) | GPR55 | Intron | 2 |
chr2:232 246 907 | 127 | LINE (L1) | DIS3L2 | Intron | 2 |
chr2:232 981 165 | 311 | SINE (Alu) | NGEF | Intron | 2 |
chr3:2 920 307 | 318 | SINE (Alu) | CNTN4 | Intron | 2 |
chr3:4 163 465 | 314 | SINE (Alu) | SUMF1 | Intron | 2 |
chr3:7 088 682 | 316 | SINE (Alu) | GRM7 | Intron | 2 |
chr3:7 572 894 | 311 | SINE (Alu) | GRM7 | Intron | 2 |
chr3:8 440 375 | 505 | Retroposon (SVA) | LOC101927394 | Intron | 2 |
chr3:10 070 465 | 208 | Retroposon (SVA) | FANCD2 | Intron | 2 |
chr3:11 487 519 | 522 | Retroposon (SVA) | ATG7 | Intron | 2 |
chr3:12 095 537 | 325 | SINE (Alu) | SYN2 | Intron | 2 |
chr3:14 041 654 | 332 | SINE (Alu) | TPRXL | Intron | 2 |
chr3:15 742 680 | 748 | Retroposon (SVA) | ANKRD28 | Intron | 2 |
chr3:16 980 126 | 779 | Retroposon (SVA) | PLCL2 | Intron | 2 |
chr3:24 946 366 | 2 952 | LINE (L1) | RARB | Intron | 2 |
chr3:25 249 858 | 71 | LINE (L1) | RARB | Intron | 2 |
chr3:25 348 403 | 318 | SINE (Alu) | RARB | Intron | 2 |
chr3:28 665 552 | 268 | SINE (Alu) | ZCWPW2 | Intron | 2 |
chr3:29 473 341 | 159 | LTR (ERV1) | ZCWPW2 | Intron | 1 |
chr3:31 839 889 | 327 | SINE (Alu) | OSBPL10 | Intron | 2 |
chr3:34 317 734 | 6 091 | LINE (L1) | LINC01811 | Intron | 2 |
chr3:42 856 917 | 326 | SINE (Alu) | ACKR2 | Intron | 2 |
chr3:45 501 159 | 315 | SINE (Alu) | LARS2 | Intron | 2 |
chr3:47 741 368 | 317 | SINE (Alu) | SMARCC1 | Intron | 2 |
chr3:48 330 822 | 325 | SINE (Alu) | SPINK8 | Intron | 2 |
chr3:49 913 639 | 325 | SINE (Alu) | MON1A | Intron | 2 |
chr3:50 025 591 | 268 | SINE (Alu) | RBM6 | Intron | 2 |
chr3:50 084 927 | 174 | Retroposon (SVA) | RBM6 | Intron | 1 |
chr3:50 311 874 | 492 | Retroposon (SVA) | HYAL1 | Intron | 1 |
chr3:50 841 730 | 331 | SINE (Alu) | DOCK3 | Intron | 2 |
chr3:51 249 632 | 77 | Retroposon (SVA) | DOCK3 | Intron | 2 |
chr3:55 754 538 | 6 054 | LINE (L1) | ERC2 | Intron | 2 |
chr3:56 584 248 | 79 | Retroposon (SVA) | CCDC66 | Intron | 2 |
chr3:59 908 834 | 108 | SINE (Alu) | FHIT | Intron | 2 |
chr3:61 671 727 | 177 | Retroposon (SVA) | PTPRG | Intron | 2 |
chr3:61 671 741 | 279 | Retroposon (SVA) | PTPRG | Intron | 1 |
chr3:67 444 511 | 403 | Retroposon (SVA) | SUCLG2 | Intron | 2 |
chr3:76 936 718 | 319 | SINE (Alu) | ROBO2 | Intron | 2 |
chr3:78 809 652 | 88 | LINE (L1) | ROBO1 | Intron | 2 |
chr3:86 058 273 | 331 | SINE (Alu) | CADM2 | Intron | 2 |
chr3:89 257 671 | 322 | SINE (Alu) | EPHA3 | Intron | 2 |
chr3:98 836 816 | 78 | Retroposon (SVA) | DCBLD2 | Intron | 2 |
chr3:99 007 919 | 312 | SINE (Alu) | LOC105374002 | Intron | 2 |
chr3:99 936 539 | 324 | SINE (Alu) | CMSS1 | Intron | 2 |
chr3:111 268 619 | 321 | SINE (Alu) | LOC105374038 | Intron | 2 |
chr3:111 507 514 | 339 | SINE (Alu) | LOC105374039 | Intron | 2 |
chr3:112 205 623 | 49 | LINE (L1) | SLC9C1 | Intron | 2 |
chr3:112 747 856 | 3 451 | Retroposon (SVA) | LINC02042 | Intron | 2 |
chr3:123 407 764 | 310 | SINE (Alu) | ADCY5 | Intron | 2 |
chr3:123 871 864 | 6 046 | LINE (L1) | MYLK | Intron | 2 |
chr3:124 849 824 | 322 | SINE (Alu) | ITGB5 | Intron | 2 |
chr3:124 922 697 | 135 | SINE (Alu) | MUC13 | Intron | 2 |
chr3:125 910 277 | 53 | LTR (ERVL) | LOC102723696 | Promoter | 2 |
chr3:125 910 277 | 53 | LTR (ERVL) | LINC02614 | Intron | 2 |
chr3:128 676 364 | 312 | SINE (Alu) | RPN1 | Intron | 2 |
chr3:128 955 324 | 176 | Retroposon (SVA) | CFAP92 | Intron | 2 |
chr3:130 219 573 | 318 | SINE (Alu) | COL6A4P2 | Intron | 2 |
chr3:132 470 620 | 403 | Retroposon (SVA) | DNAJC13 | Intron | 2 |
chr3:132 471 009 | 49 | Retroposon (SVA) | DNAJC13 | Intron | 2 |
chr3:136 893 195 | 105 | LINE (L1) | NCK1 | Intron | 2 |
chr3:142 741 180 | 314 | SINE (Alu) | TRPC1 | Intron | 2 |
chr3:143 475 998 | 314 | SINE (Alu) | SLC9A9 | Intron | 2 |
chr3:149 380 192 | 680 | Retroposon (SVA) | TM4SF1-AS1 | Intron | 2 |
chr3:151 820 689 | 171 | SINE (Alu) | AADAC | Intron | 2 |
chr3:153 444 920 | 150 | SINE (Alu) | LINC02877 | Intron | 2 |
chr3:158 245 130 | 337 | SINE (Alu) | RSRC1 | Intron | 2 |
chr3:160 409 110 | 176 | SINE (Alu) | SMC4 | Intron | 2 |
chr3:169 167 960 | 309 | SINE (Alu) | MECOM | Intron | 2 |
chr3:174 211 574 | 119 | LTR (ERV1) | NLGN1 | Intron | 1 |
chr3:174 507 650 | 338 | SINE (Alu) | NAALADL2 | Intron | 2 |
chr3:174 692 945 | 321 | SINE (Alu) | NAALADL2 | Intron | 2 |
chr3:174 796 725 | 242 | LINE (L1) | NAALADL2 | Intron | 2 |
chr3:178 393 249 | 329 | SINE (Alu) | KCNMB2 | Intron | 2 |
chr3:179 121 484 | 67 | Retroposon (SVA) | PIK3CA-DT | Intron | 2 |
chr3:181 475 048 | 3 196 | LINE (L1) | SOX2-OT | Intron | 1 |
chr3:182 153 141 | 129 | LINE (L1) | LOC105374243 | Intron | 1 |
chr3:183 870 209 | 302 | SINE (Alu) | MAP6D1 | Intron | 2 |
chr3:187 240 159 | 328 | SINE (Alu) | MASP1 | Intron | 2 |
chr3:189 165 421 | 321 | SINE (Alu) | TPRG1 | Intron | 2 |
chr3:191 390 410 | 77 | LTR (ERV1) | CCDC50 | Intron | 2 |
chr3:196 874 212 | 322 | SINE (Alu) | SENP5 | Intron | 2 |
chr4:1 308 027 | 317 | SINE (Alu) | MAEA | Intron | 2 |
chr4:1 319 643 | 132 | SINE (Alu) | MAEA | Intron | 2 |
chr4:4 349 002 | 64 | LTR (ERV1) | NSG1 | Intron | 1 |
chr4:4 357 815 | 132 | LINE (L1) | NSG1 | Intron | 2 |
chr4:9 449 339 | 137 | LINE (L1) | DEFB131A | Intron | 2 |
chr4:13 761 218 | 145 | Retroposon (SVA) | LOC107986182 | Intron | 2 |
chr4:14 847 401 | 5 443 | LINE (L1) | LINC00504 | Intron | 2 |
chr4:14 955 276 | 114 | LTR (ERVL) | CPEB2-DT | Intron | 2 |
chr4:15 615 466 | 237 | LTR (ERV1) | FBXL5 | Intron | 2 |
chr4:19 364 519 | 325 | SINE (Alu) | LINC02438 | Intron | 2 |
chr4:25 808 835 | 135 | SINE (Alu) | SEL1L3 | Intron | 1 |
chr4:25 808 835 | 135 | SINE (Alu) | SEL1L3 | Intron | 1 |
chr4:37 509 272 | 84 | Retroposon (SVA) | C4orf19 | Intron | 2 |
chr4:37 532 947 | 111 | LINE (L1) | C4orf19 | Intron | 2 |
chr4:39 408 924 | 320 | SINE (Alu) | KLB | Intron | 2 |
chr4:42 086 022 | 315 | SINE (Alu) | SLC30A9 | Intron | 2 |
chr4:46 378 053 | 292 | Retroposon (SVA) | GABRA2 | Intron | 1 |
chr4:47 005 771 | 421 | LINE (L1) | GABRB1 | Intron | 2 |
chr4:47 494 499 | 314 | SINE (Alu) | ATP10D | Intron | 2 |
chr4:47 542 099 | 333 | SINE (Alu) | ATP10D | Intron | 2 |
chr4:52 081 944 | 147 | LINE (CR1) | SPATA18 | Intron | 2 |
chr4:52 737 160 | 170 | SINE (Alu) | RASL11B | Intron | 2 |
chr4:52 985 667 | 311 | SINE (Alu) | SCFD2 | Intron | 2 |
chr4:53 549 475 | 318 | SINE (Alu) | PDGFRA | Intron | 2 |
chr4:54 154 800 | 160 | LTR (ERV1) | PDGFRA | Intron | 1 |
chr4:64 351 027 | 291 | SINE (Alu) | TECRL | Intron | 2 |
chr4:72 104 993 | 318 | SINE (Alu) | NPFFR2 | Intron | 2 |
chr4:76 102 654 | 315 | SINE (Alu) | ART3 | Intron | 2 |
chr4:81 708 982 | 317 | SINE (Alu) | RASGEF1B | Intron | 2 |
chr4:85 549 216 | 314 | SINE (Alu) | ARHGAP24 | Intron | 2 |
chr4:85 583 924 | 72 | LINE (L1) | ARHGAP24 | Intron | 2 |
chr4:87 308 500 | 143 | SINE (Alu) | HSD17B13 | Intron | 2 |
chr4:87 713 074 | 320 | SINE (Alu) | LOC105377324 | Intron | 2 |
chr4:98 046 002 | 54 | LINE (L1) | STPG2 | Intron | 2 |
chr4:101 120 577 | 318 | SINE (Alu) | PPP3CA | Intron | 2 |
chr4:102 422 590 | 1 885 | LINE (L1) | SLC39A8 | Intron | 2 |
chr4:104 545 400 | 318 | SINE (Alu) | CXXC4-AS1 | Intron | 2 |
chr4:105 586 230 | 325 | SINE (Alu) | ARHGEF38 | Intron | 2 |
chr4:114 628 762 | 317 | SINE (Alu) | UGT8 | Intron | 2 |
chr4:117 844 098 | 1 731 | LINE (L1) | LINC02264 | Intron | 2 |
chr4:118 853 560 | 317 | SINE (Alu) | SYNPO2 | Intron | 2 |
chr4:132 196 673 | 315 | SINE (Alu) | LOC105377428 | Intron | 2 |
chr4:134 001 190 | 306 | SINE (Alu) | PABPC4L | Intron | 2 |
chr4:134 209 110 | 327 | SINE (Alu) | PABPC4L | Intron | 2 |
chr4:136 885 359 | 139 | SINE (Alu) | LINC02511 | Intron | 2 |
chr4:138 304 044 | 323 | SINE (Alu) | LINC00498 | Intron | 2 |
chr4:140 017 765 | 150 | SINE (Alu) | MAML3 | Intron | 2 |
chr4:144 784 654 | 134 | LINE (L1) | GYPA | Intron | 2 |
chr4:147 132 785 | 324 | SINE (Alu) | LOC105377476 | Intron | 2 |
chr4:150 660 237 | 97 | Retroposon (SVA) | LRBA | Intron | 1 |
chr4:150 953 967 | 79 | Retroposon (SVA) | LRBA | Intron | 2 |
chr4:151 214 784 | 126 | Retroposon (SVA) | SH3D19 | Intron | 2 |
chr4:153 979 895 | 318 | SINE (Alu) | LOC101927947 | Intron | 2 |
chr4:154 213 487 | 74 | LTR (ERVL) | LOC101927947 | Intron | 1 |
chr4:159 704 885 | 335 | SINE (Alu) | LINC02233 | Intron | 2 |
chr4:161 435 495 | 310 | SINE (Alu) | FSTL5 | Intron | 2 |
chr4:163 836 593 | 223 | SINE (Alu) | MARCHF1 | Intron | 2 |
chr4:164 112 984 | 277 | SINE (Alu) | MARCHF1 | Intron | 2 |
chr4:165 269 623 | 322 | SINE (Alu) | KLHL2 | Intron | 2 |
chr4:169 667 679 | 314 | SINE (Alu) | CLCN3 | Intron | 2 |
chr4:169 913 439 | 299 | SINE (Alu) | LOC105377530 | Intron | 2 |
chr4:173 123 062 | 318 | SINE (Alu) | GALNT7-DT | Intron | 2 |
chr4:173 228 288 | 315 | SINE (Alu) | GALNT7 | Intron | 2 |
chr4:174 290 427 | 311 | SINE (Alu) | CEP44 | Intron | 2 |
chr4:181 070 771 | 337 | SINE (Alu) | LINC00290 | Intron | 2 |
chr4:185 440 757 | 303 | SINE (Alu) | C4orf47 | Intron | 2 |
chr4:185 460 991 | 289 | SINE (Alu) | CCDC110 | Intron | 2 |
chr5:1 585 386 | 314 | SINE (Alu) | SDHAP3 | Intron | 2 |
chr5:1 812 525 | 311 | SINE (Alu) | NDUFS6 | Intron | 2 |
chr5:3 383 808 | 144 | SINE (Alu) | LINC01019 | Intron | 2 |
chr5:5 279 667 | 313 | SINE (Alu) | ADAMTS16 | Intron | 2 |
chr5:7 151 510 | 328 | SINE (Alu) | LINC02196 | Intron | 2 |
chr5:10 634 867 | 317 | SINE (Alu) | ANKRD33B | Intron | 2 |
chr5:16 716 503 | 310 | SINE (Alu) | MYO10 | Intron | 2 |
chr5:17 712 495 | 332 | SINE (Alu) | LINC02223 | Intron | 2 |
chr5:20 471 978 | 279 | LINE (L2) | CDH18 | Intron | 2 |
chr5:20 928 745 | 316 | SINE (Alu) | LINC02241 | Intron | 2 |
chr5:32 762 455 | 328 | SINE (Alu) | NPR3 | Intron | 2 |
chr5:32 974 396 | 1 064 | LINE (L1) | LOC105374715 | Intron | 2 |
chr5:33 633 231 | 5 217 | LINE (L1) | ADAMTS12 | Intron | 2 |
chr5:34 113 145 | 321 | SINE (Alu) | C1QTNF3-AMACR | Intron | 2 |
chr5:34 717 924 | 336 | SINE (Alu) | RAI14 | Intron | 2 |
chr5:37 563 675 | 95 | Retroposon (SVA) | WDR70 | Intron | 2 |
chr5:37 688 692 | 281 | SINE (Alu) | WDR70 | Intron | 2 |
chr5:39 292 866 | 330 | SINE (Alu) | C9 | Intron | 2 |
chr5:39 938 350 | 329 | SINE (Alu) | LINC00603 | Intron | 2 |
chr5:42 625 750 | 334 | SINE (Alu) | GHR | Intron | 2 |
chr5:43 393 687 | 328 | SINE (Alu) | CCL28 | Intron | 2 |
chr5:43 517 805 | 328 | SINE (Alu) | C5orf34-AS1 | Intron | 2 |
chr5:54 087 760 | 65 | SINE (Alu) | ARL15 | Intron | 2 |
chr5:55 433 459 | 334 | SINE (Alu) | PLPP1 | Intron | 2 |
chr5:55 695 929 | 97 | Retroposon (SVA) | SLC38A9 | Intron | 1 |
chr5:55 696 695 | 293 | Retroposon (SVA) | SLC38A9 | Intron | 2 |
chr5:59 220 802 | 314 | SINE (Alu) | PDE4D | Intron | 2 |
chr5:62 339 522 | 310 | SINE (Alu) | KIF2A | Intron | 2 |
chr5:65 940 635 | 48 | Retroposon (SVA) | ERBIN | Intron | 1 |
chr5:68 967 632 | 651 | LINE (L1) | LOC107984116 | Intron | 2 |
chr5:69 515 538 | 96 | Retroposon (SVA) | OCLN | Intron | 2 |
chr5:76 172 403 | 50 | Retroposon (SVA) | SV2C | Intron | 1 |
chr5:76 172 419 | 98 | Retroposon (SVA) | SV2C | Intron | 1 |
chr5:77 042 983 | 300 | Retroposon (SVA) | AGGF1 | Intron | 1 |
chr5:77 395 389 | 313 | SINE (Alu) | PDE8B | Intron | 2 |
chr5:77 420 368 | 333 | SINE (Alu) | PDE8B | Intron | 2 |
chr5:82 140 183 | 973 | Retroposon (SVA) | ATG10 | Intron | 2 |
chr5:82 140 204 | 211 | Retroposon (SVA) | ATG10 | Intron | 2 |
chr5:87 076 864 | 295 | SINE (Alu) | LOC101929380 | Intron | 2 |
chr5:87 301 462 | 245 | SINE (Alu) | RASA1 | Intron | 2 |
chr5:90 154 950 | 6 074 | LINE (L1) | LINC01339 | Intron | 2 |
chr5:90 702 006 | 152 | SINE (Alu) | ADGRV1 | Intron | 2 |
chr5:104 128 705 | 324 | SINE (Alu) | NIHCOLE | Intron | 2 |
chr5:106 845 191 | 325 | SINE (Alu) | LINC01950 | Intron | 2 |
chr5:111 450 624 | 189 | SINE (Alu) | CAMK4 | Intron | 2 |
chr5:115 404 023 | 289 | SINE (Alu) | LOC105379130 | Intron | 2 |
chr5:117 973 457 | 176 | LTR (ERVL) | LINC02147 | Intron | 2 |
chr5:137 059 136 | 233 | LINE (L2) | SPOCK1 | Intron | 2 |
chr5:137 190 010 | 288 | SINE (Alu) | SPOCK1 | Intron | 2 |
chr5:142 379 076 | 311 | SINE (Alu) | SPRY4-AS1 | Intron | 2 |
chr5:143 631 222 | 322 | SINE (Alu) | LOC105378210 | Intron | 2 |
chr5:147 258 152 | 295 | SINE (Alu) | STK32A | Intron | 2 |
chr5:149 537 753 | 323 | SINE (Alu) | CSNK1A1 | Intron | 2 |
chr5:152 743 990 | 315 | SINE (Alu) | LINC01470 | Intron | 2 |
chr5:153 150 161 | 314 | SINE (Alu) | LINC01470 | Intron | 2 |
chr5:155 906 881 | 2 479 | LINE (L1) | SGCD | Intron | 2 |
chr5:159 695 129 | 315 | SINE (Alu) | LOC105377684 | Intron | 2 |
chr5:160 600 988 | 344 | SINE (Alu) | ATP10B | Intron | 2 |
chr5:162 530 740 | 5 454 | LINE (L1) | LOC105377697 | Intron | 2 |
chr5:162 804 935 | 314 | SINE (Alu) | LOC105377697 | Intron | 2 |
chr5:165 068 136 | 6 104 | LINE (L1) | LINC03000 | Intron | 2 |
chr5:170 774 321 | 311 | SINE (Alu) | GABRP | Intron | 2 |
chr5:176 305 307 | 478 | Retroposon (SVA) | SIMC1 | Intron | 2 |
chr5:176 305 349 | 130 | Retroposon (SVA) | SIMC1 | Intron | 2 |
chr5:177 635 730 | 1 221 | LINE (L1) | LOC202181 | Intron | 2 |
chr5:178 458 165 | 62 | LINE (L1) | COL23A1 | Intron | 2 |
chr6:1 051 552 | 186 | LTR (ERVL) | LINC01622 | Intron | 2 |
chr6:2 972 359 | 303 | SINE (Alu) | SERPINB6 | Promoter | 2 |
chr6:5 348 526 | 320 | SINE (Alu) | FARS2 | Intron | 2 |
chr6:8 110 692 | 328 | SINE (Alu) | LOC105374910 | Intron | 2 |
chr6:19 346 204 | 318 | SINE (Alu) | LOC107986575 | Intron | 2 |
chr6:20 168 888 | 314 | SINE (Alu) | MBOAT1 | Intron | 2 |
chr6:26 994 391 | 117 | SINE (Alu) | LINC00240 | Promoter | 2 |
chr6:26 994 391 | 117 | SINE (Alu) | LINC00240 | Intron | 2 |
chr6:27 485 062 | 398 | Retroposon (SVA) | LOC105375001 | Intron | 1 |
chr6:30 030 705 | 324 | SINE (Alu) | POLR1HASP | Intron | 2 |
chr6:31 021 332 | 81 | LTR (ERV1) | MUC22 | Intron | 2 |
chr6:31 471 222 | 313 | SINE (Alu) | HCP5 | Intron | 2 |
chr6:31 498 462 | 143 | SINE (Alu) | MICB | Intron | 2 |
chr6:32 518 332 | 292 | SINE (Alu) | HLA-DRB5 | Intron | 2 |
chr6:32 520 783 | 314 | SINE (Alu) | HLA-DRB5 | Intron | 2 |
chr6:32 523 879 | 311 | SINE (Alu) | HLA-DRB5 | Intron | 2 |
chr6:32 525 041 | 326 | SINE (Alu) | HLA-DRB5 | Intron | 2 |
chr6:32 528 619 | 313 | SINE (Alu) | HLA-DRB5 | Intron | 2 |
chr6:32 529 427 | 297 | SINE (Alu) | HLA-DRB5 | Intron | 2 |
chr6:32 667 886 | 1 001 | LTR (ERVK) | HLA-DQB1 | Intron | 2 |
chr6:33 247 071 | 330 | SINE (Alu) | LOC105375022 | Promoter | 2 |
chr6:34 405 663 | 329 | SINE (Alu) | NUDT3 | Intron | 2 |
chr6:38 964 349 | 343 | Retroposon (SVA) | DNAH8 | Intron | 1 |
chr6:42 702 567 | 327 | SINE (Alu) | PRPH2 | Intron | 2 |
chr6:43 927 736 | 316 | SINE (Alu) | LINC01512 | Intron | 2 |
chr6:44 146 440 | 980 | Retroposon (SVA) | TMEM63B | Intron | 2 |
chr6:44 319 523 | 606 | LINE (L2) | SPATS1 | Intron | 2 |
chr6:45 292 724 | 323 | SINE (Alu) | SUPT3H | Intron | 2 |
chr6:46 109 870 | 329 | SINE (Alu) | CLIC5 | Intron | 2 |
chr6:47 505 628 | 723 | Retroposon (SVA) | CD2AP | Intron | 2 |
chr6:49 487 167 | 104 | LINE (L1) | CENPQ | Intron | 2 |
chr6:51 982 170 | 1 143 | Retroposon (SVA) | PKHD1 | Intron | 2 |
chr6:54 849 738 | 323 | SINE (Alu) | FAM83B | Intron | 2 |
chr6:64 126 336 | 191 | SINE (Alu) | EYS | Intron | 2 |
chr6:64 312 991 | 307 | LINE (L1) | EYS | Intron | 1 |
chr6:64 609 588 | 327 | SINE (Alu) | EYS | Intron | 2 |
chr6:65 454 072 | 308 | SINE (Alu) | EYS | Intron | 2 |
chr6:68 932 874 | 326 | SINE (Alu) | ADGRB3 | Intron | 2 |
chr6:69 061 776 | 55 | LINE (L1) | ADGRB3 | Intron | 2 |
chr6:69 122 017 | 75 | Retroposon (SVA) | ADGRB3 | Intron | 2 |
chr6:72 089 797 | 6 036 | LINE (L1) | RIMS1 | Intron | 2 |
chr6:73 289 794 | 141 | SINE (Alu) | LOC122539212 | Intron | 2 |
chr6:73 601 480 | 273 | Retroposon (SVA) | SLC17A5 | Intron | 2 |
chr6:73 795 113 | 320 | SINE (Alu) | CD109 | Intron | 2 |
chr6:77 654 536 | 304 | SINE (Alu) | MEI4 | Intron | 2 |
chr6:77 707 034 | 320 | SINE (Alu) | MEI4 | Intron | 2 |
chr6:81 587 704 | 321 | SINE (Alu) | LOC105377871 | Intron | 2 |
chr6:88 947 707 | 119 | Retroposon (SVA) | RNGTT | Intron | 2 |
chr6:88 947 973 | 84 | Retroposon (SVA) | RNGTT | Intron | 1 |
chr6:94 658 640 | 330 | SINE (Alu) | LOC105377901 | Intron | 2 |
chr6:96 193 217 | 1 012 | LINE (L1) | FUT9 | Intron | 2 |
chr6:96 497 728 | 68 | LINE (L1) | UFL1-AS1 | Intron | 2 |
chr6:96 569 793 | 322 | SINE (Alu) | FHL5 | Intron | 2 |
chr6:97 803 451 | 305 | SINE (Alu) | LOC101927314 | Intron | 2 |
chr6:99 959 608 | 312 | SINE (Alu) | MCHR2 | Intron | 2 |
chr6:101 724 118 | 329 | SINE (Alu) | GRIK2 | Intron | 2 |
chr6:101 772 687 | 323 | SINE (Alu) | GRIK2 | Intron | 2 |
chr6:101 835 882 | 1 269 | LINE (L1) | GRIK2 | Intron | 2 |
chr6:107 078 566 | 137 | SINE (Alu) | BEND3 | Intron | 2 |
chr6:109 047 036 | 671 | Retroposon (SVA) | SESN1 | Intron | 2 |
chr6:109 781 772 | 289 | SINE (Alu) | FIG4 | Intron | 2 |
chr6:110 305 536 | 310 | SINE (Alu) | METTL24 | Intron | 2 |
chr6:110 404 690 | 328 | SINE (Alu) | DDO | Intron | 2 |
chr6:114 227 232 | 316 | SINE (Alu) | HDAC2-AS2 | Intron | 2 |
chr6:114 921 893 | 75 | LINE (L1) | LOC107986639 | Intron | 2 |
chr6:116 522 975 | 318 | SINE (Alu) | TRAPPC3L | Intron | 2 |
chr6:118 304 984 | 293 | SINE (Alu) | SLC35F1 | Intron | 2 |
chr6:122 658 846 | 319 | SINE (Alu) | PKIB | Intron | 2 |
chr6:129 507 082 | 327 | SINE (Alu) | LAMA2 | Intron | 2 |
chr6:130 293 637 | 283 | SINE (Alu) | SAMD3 | Intron | 2 |
chr6:130 952 342 | 320 | SINE (Alu) | EPB41L2 | Intron | 2 |
chr6:133 410 618 | 178 | SINE (Alu) | EYA4 | Intron | 2 |
chr6:136 045 900 | 278 | SINE (Alu) | PDE7B | Intron | 2 |
chr6:136 151 778 | 70 | SINE (Alu) | PDE7B | Intron | 1 |
chr6:142 128 961 | 6 008 | LINE (L1) | NMBR | Intron | 2 |
chr6:143 630 226 | 311 | SINE (Alu) | PHACTR2 | Intron | 2 |
chr6:147 874 651 | 2 642 | LINE (L1) | SAMD5 | Intron | 2 |
chr6:148 481 014 | 283 | SINE (Alu) | SASH1 | Intron | 2 |
chr6:149 574 167 | 135 | SINE (Alu) | GINM1 | Intron | 2 |
chr6:149 786 212 | 53 | Retroposon (SVA) | PCMT1 | Intron | 1 |
chr6:149 803 477 | 302 | SINE (Alu) | PCMT1 | Intron | 2 |
chr6:153 312 233 | 316 | SINE (Alu) | LOC105378066 | Intron | 2 |
chr6:158 349 077 | 262 | Retroposon (SVA) | TULP4 | Intron | 2 |
chr6:160 915 407 | 317 | SINE (Alu) | LOC105378093 | Intron | 2 |
chr6:161 760 223 | 4 000 | LINE (L1) | PRKN | Intron | 2 |
chr6:162 253 763 | 324 | SINE (Alu) | PRKN | Intron | 2 |
chr6:162 592 818 | 357 | SINE (Alu) | PRKN | Intron | 2 |
chr6:166 711 308 | 318 | SINE (Alu) | RPS6KA2 | Intron | 2 |
chr6:166 784 176 | 522 | LTR (ERVK) | RPS6KA2 | Intron | 1 |
chr6:168 588 126 | 324 | SINE (Alu) | SMOC2 | Intron | 2 |
chr6:170 185 527 | 330 | SINE (Alu) | LOC154449 | Intron | 2 |
chr7:2 268 722 | 126 | Retroposon (SVA) | SNX8 | Intron | 2 |
chr7:2 424 360 | 337 | SINE (Alu) | CHST12 | Intron | 2 |
chr7:8 495 321 | 317 | SINE (Alu) | NXPH1 | Intron | 2 |
chr7:10 465 285 | 225 | Retroposon (SVA) | MGC4859 | Intron | 1 |
chr7:15 423 549 | 134 | LTR (ERVL) | AGMO | Intron | 2 |
chr7:18 282 964 | 280 | SINE (Alu) | HDAC9 | Intron | 2 |
chr7:19 478 703 | 4 744 | LINE (L1) | LOC105375180 | Intron | 2 |
chr7:20 196 675 | 326 | SINE (Alu) | MACC1 | Intron | 2 |
chr7:23 626 049 | 312 | SINE (Alu) | CCDC126 | Intron | 2 |
chr7:23 637 669 | 97 | Retroposon (SVA) | CCDC126 | Intron | 1 |
chr7:26 168 425 | 118 | LINE (L1) | NFE2L3 | Intron | 2 |
chr7:29 145 540 | 327 | SINE (Alu) | CHN2 | Intron | 2 |
chr7:31 761 098 | 80 | SINE (MIR) | PDE1C | Intron | 2 |
chr7:36 212 541 | 319 | SINE (Alu) | EEPD1 | Intron | 2 |
chr7:37 797 033 | 310 | SINE (Alu) | GPR141 | Intron | 2 |
chr7:45 749 603 | 323 | SINE (Alu) | SEPTIN7P2 | Intron | 2 |
chr7:47 511 477 | 334 | SINE (Alu) | TNS3 | Intron | 2 |
chr7:56 021 026 | 324 | SINE (Alu) | PSPH | Intron | 2 |
chr7:56 021 637 | 59 | SINE (Alu) | PSPH | Intron | 2 |
chr7:64 809 487 | 125 | Retroposon (SVA) | ZNF138 | Intron | 2 |
chr7:69 293 439 | 332 | SINE (Alu) | LOC105375345 | Intron | 2 |
chr7:74 809 479 | 193 | SINE (Alu) | GTF2IRD2 | Intron | 2 |
chr7:80 793 843 | 330 | SINE (Alu) | SEMA3C | Intron | 2 |
chr7:82 372 562 | 326 | SINE (Alu) | CACNA2D1 | Intron | 2 |
chr7:82 801 191 | 314 | SINE (Alu) | PCLO | Intron | 2 |
chr7:83 460 624 | 62 | LTR (ERV1) | SEMA3E | Intron | 2 |
chr7:84 299 804 | 69 | SINE (Alu) | SEMA3A | Intron | 2 |
chr7:89 215 579 | 340 | SINE (Alu) | ZNF804B | Intron | 2 |
chr7:95 149 736 | 327 | SINE (Alu) | PPP1R9A | Intron | 2 |
chr7:99 240 044 | 331 | SINE (Alu) | MYH16 | Intron | 2 |
chr7:100 948 850 | 52 | SINE (Alu) | MUC3A | Promoter | 2 |
chr7:100 973 079 | 331 | SINE (Alu) | MUC12 | Intron | 2 |
chr7:102 549 902 | 84 | SINE (Alu) | POLR2J3-UPK3BL2 | Intron | 1 |
chr7:105 255 124 | 323 | SINE (Alu) | SRPK2 | Intron | 2 |
chr7:105 825 613 | 215 | SINE (Alu) | ATXN7L1 | Intron | 2 |
chr7:108 188 803 | 6 055 | LINE (L1) | NRCAM | Intron | 2 |
chr7:110 844 692 | 96 | LINE (L1) | IMMP2L | Intron | 2 |
chr7:117 121 885 | 269 | SINE (Alu) | ST7 | Intron | 2 |
chr7:117 716 192 | 319 | SINE (Alu) | CTTNBP2 | Intron | 2 |
chr7:118 443 246 | 316 | SINE (Alu) | ANKRD7 | Intron | 2 |
chr7:123 554 487 | 308 | SINE (Alu) | NDUFA5 | Intron | 2 |
chr7:128 577 275 | 307 | Retroposon (SVA) | LINC01000 | Intron | 2 |
chr7:129 476 166 | 90 | Retroposon (SVA) | STRIP2 | Intron | 1 |
chr7:130 591 390 | 627 | Retroposon (SVA) | COPG2 | Intron | 2 |
chr7:131 224 137 | 144 | SINE (Alu) | MKLN1 | Intron | 2 |
chr7:132 166 350 | 328 | SINE (Alu) | PLXNA4 | Intron | 2 |
chr7:133 896 830 | 176 | SINE (Alu) | EXOC4 | Intron | 2 |
chr7:139 101 477 | 378 | Retroposon (SVA) | ZC3HAV1 | Intron | 2 |
chr7:140 637 145 | 316 | SINE (Alu) | DENND2A | Intron | 2 |
chr7:141 313 777 | 318 | SINE (Alu) | TMEM178B | Intron | 2 |
chr7:154 062 983 | 236 | LTR (ERV1) | DPP6 | Intron | 2 |
chr7:154 268 949 | 311 | SINE (Alu) | DPP6 | Intron | 2 |
chr7:154 590 554 | 328 | SINE (Alu) | DPP6 | Intron | 2 |
chr7:155 367 108 | 77 | Retroposon (SVA) | BLACE | Intron | 2 |
chr7:157 656 078 | 314 | SINE (Alu) | PTPRN2 | Intron | 2 |
chr7:158 810 996 | 126 | SINE (Alu) | ESYT2 | Intron | 2 |
chr7:902 456 | 175 | SINE (Alu) | ADAP1 | Intron | 2 |
chr8:3 769 438 | 328 | SINE (Alu) | CSMD1 | Intron | 2 |
chr8:4 595 369 | 94 | LINE (L1) | CSMD1 | Intron | 2 |
chr8:6 187 437 | 317 | SINE (Alu) | LOC105377797 | Intron | 2 |
chr8:6 196 794 | 91 | LINE (L1) | LOC105377797 | Intron | 2 |
chr8:9 062 603 | 321 | SINE (Alu) | ERI1 | Intron | 2 |
chr8:9 606 137 | 312 | SINE (Alu) | TNKS | Intron | 2 |
chr8:14 117 908 | 321 | SINE (Alu) | SGCZ | Intron | 2 |
chr8:15 690 996 | 323 | SINE (Alu) | TUSC3 | Intron | 2 |
chr8:16 245 296 | 275 | SINE (Alu) | MSR1 | Intron | 2 |
chr8:16 674 061 | 848 | LINE (L1) | LOC101929028 | Intron | 2 |
chr8:22 625 878 | 328 | SINE (Alu) | BIN3 | Intron | 2 |
chr8:22 922 448 | 349 | SINE (Alu) | PEBP4 | Intron | 2 |
chr8:25 315 133 | 299 | SINE (Alu) | DOCK5 | Intron | 2 |
chr8:28 684 943 | 129 | LINE (L1) | EXTL3 | Intron | 2 |
chr8:32 502 454 | 314 | SINE (Alu) | NRG1 | Intron | 2 |
chr8:32 514 935 | 197 | LINE (L1) | NRG1 | Intron | 2 |
chr8:33 904 132 | 284 | SINE (Alu) | LOC105379364 | Intron | 2 |
chr8:39 006 540 | 313 | SINE (Alu) | ADAM9 | Promoter | 2 |
chr8:39 006 540 | 313 | SINE (Alu) | ADAM9 | Intron | 2 |
chr8:42 182 377 | 309 | SINE (Alu) | PLAT | Intron | 2 |
chr8:43 179 659 | 97 | Retroposon (SVA) | HGSNAT | Promoter | 2 |
chr8:43 179 659 | 97 | Retroposon (SVA) | HGSNAT | Intron | 2 |
chr8:60 614 219 | 321 | SINE (Alu) | RAB2A | Intron | 2 |
chr8:62 431 909 | 322 | SINE (Alu) | NKAIN3 | Intron | 2 |
chr8:64 686 416 | 77 | Retroposon (SVA) | CYP7B1 | Intron | 2 |
chr8:65 662 664 | 73 | Retroposon (SVA) | MTFR1 | Intron | 2 |
chr8:66 469 644 | 229 | LINE (L1) | VXN | Intron | 2 |
chr8:68 069 556 | 328 | SINE (Alu) | PREX2 | Intron | 2 |
chr8:71 293 804 | 324 | SINE (Alu) | EYA1 | Intron | 2 |
chr8:74 150 320 | 318 | SINE (Alu) | LOC105375903 | Intron | 2 |
chr8:74 463 097 | 317 | SINE (Alu) | GDAP1 | Intron | 2 |
chr8:79 838 639 | 319 | SINE (Alu) | LOC101927040 | Intron | 2 |
chr8:84 525 028 | 307 | SINE (Alu) | RALYL | Intron | 2 |
chr8:86 067 390 | 320 | SINE (Alu) | PSKH2 | Intron | 2 |
chr8:86 964 152 | 73 | LTR (ERV1) | CNBD1 | Intron | 2 |
chr8:90 686 770 | 520 | LTR (ERV1) | LOC105375633 | Intron | 2 |
chr8:95 645 037 | 325 | SINE (Alu) | CFAP418-AS1 | Intron | 2 |
chr8:109 089 362 | 320 | SINE (Alu) | TRHR | Intron | 2 |
chr8:109 337 070 | 299 | SINE (Alu) | ENY2 | Intron | 2 |
chr8:119 788 537 | 232 | SINE (Alu) | TAF2 | Intron | 2 |
chr8:121 651 129 | 300 | SINE (Alu) | HAS2-AS1 | Intron | 2 |
chr8:121 718 766 | 321 | SINE (Alu) | HAS2-AS1 | Intron | 2 |
chr8:124 877 714 | 282 | SINE (Alu) | LINC00964 | Intron | 2 |
chr8:125 011 860 | 338 | SINE (Alu) | SQLE | Intron | 2 |
chr8:125 327 683 | 354 | SINE (Alu) | NSMCE2 | Intron | 2 |
chr8:126 853 220 | 291 | SINE (Alu) | LOC105375751 | Intron | 2 |
chr8:127 025 866 | 323 | SINE (Alu) | LOC105375751 | Intron | 2 |
chr8:127 316 914 | 204 | Retroposon (SVA) | PCAT1 | Intron | 2 |
chr8:128 825 943 | 177 | Retroposon (SVA) | LINC00976 | Intron | 2 |
chr8:129 258 242 | 278 | SINE (Alu) | CCDC26 | Intron | 2 |
chr8:129 699 948 | 330 | SINE (Alu) | GSDMC | Intron | 2 |
chr8:131 930 463 | 323 | SINE (Alu) | EFR3A | Intron | 2 |
chr8:134 867 666 | 112 | LINE (CR1) | LOC101927845 | Intron | 2 |
chr8:138 313 721 | 312 | SINE (Alu) | FAM135B | Intron | 2 |
chr8:140 037 950 | 330 | SINE (Alu) | TRAPPC9 | Intron | 2 |
chr8:140 950 042 | 69 | LTR (ERV1) | PTK2 | Intron | 2 |
chr8:144 347 172 | 291 | SINE (Alu) | SLC52A2 | Intron | 2 |
chr9:7 852 522 | 327 | SINE (Alu) | DMAC1 | Intron | 2 |
chr9:10 461 250 | 314 | SINE (Alu) | PTPRD | Intron | 2 |
chr9:15 234 394 | 125 | Retroposon (SVA) | TTC39B | Intron | 2 |
chr9:17 062 588 | 337 | SINE (Alu) | LOC105375983 | Intron | 2 |
chr9:19 365 709 | 95 | SINE (Alu) | DENND4C | Intron | 2 |
chr9:28 195 374 | 312 | SINE (Alu) | LINGO2 | Intron | 2 |
chr9:28 960 602 | 322 | SINE (Alu) | LINGO2 | Intron | 2 |
chr9:32 463 887 | 169 | LINE (L1) | RIGI | Intron | 2 |
chr9:33 130 551 | 2 045 | Retroposon (SVA) | B4GALT1 | Intron | 2 |
chr9:34 115 379 | 299 | SINE (Alu) | DCAF12 | Intron | 2 |
chr9:36 645 303 | 309 | SINE (Alu) | MELK | Intron | 2 |
chr9:37 190 303 | 317 | SINE (Alu) | ZCCHC7 | Intron | 2 |
chr9:37 596 333 | 324 | SINE (Alu) | SHB | Intron | 2 |
chr9:41 047 836 | 788 | LINE (L1) | FRG1HP | Intron | 2 |
chr9:63 838 317 | 308 | SINE (Alu) | FRG1JP | Intron | 2 |
chr9:67 083 505 | 299 | SINE (Alu) | CNTNAP3P2 | Intron | 2 |
chr9:70 801 716 | 315 | SINE (Alu) | TRPM3 | Intron | 2 |
chr9:70 974 307 | 132 | SINE (Alu) | TRPM3 | Intron | 2 |
chr9:72 616 616 | 313 | SINE (Alu) | TMC1 | Intron | 2 |
chr9:72 800 719 | 333 | SINE (Alu) | TMC1 | Intron | 2 |
chr9:72 806 377 | 97 | Retroposon (SVA) | TMC1 | Intron | 2 |
chr9:76 063 871 | 455 | Retroposon (SVA) | PCSK5 | Intron | 2 |
chr9:76 337 135 | 325 | SINE (Alu) | PCSK5 | Intron | 2 |
chr9:90 432 247 | 306 | SINE (Alu) | LINC01508 | Intron | 2 |
chr9:94 147 772 | 315 | SINE (Alu) | LOC107987099 | Promoter | 2 |
chr9:94 497 740 | 318 | SINE (Alu) | LOC107987100 | Intron | 2 |
chr9:104 984 603 | 727 | Retroposon (SVA) | CT70 | Intron | 2 |
chr9:110 564 791 | 330 | SINE (Alu) | SVEP1 | Intron | 2 |
chr9:110 729 242 | 325 | SINE (Alu) | MUSK | Intron | 2 |
chr9:112 514 852 | 225 | Retroposon (SVA) | KIAA1958 | Intron | 1 |
chr9:116 840 552 | 349 | Retroposon (SVA) | LOC105376239 | Intron | 2 |
chr9:116 840 602 | 562 | Retroposon (SVA) | LOC105376239 | Intron | 2 |
chr9:121 971 181 | 299 | Retroposon (SVA) | TTLL11 | Intron | 1 |
chr9:123 802 496 | 79 | LINE (L2) | DENND1A | Intron | 2 |
chr9:125 458 887 | 432 | Retroposon (SVA) | MAPKAP1 | Intron | 2 |
chr9:125 577 664 | 257 | Retroposon (SVA) | MAPKAP1 | Intron | 2 |
chr9:125 780 971 | 116 | Retroposon (SVA) | PBX3 | Intron | 2 |
chr9:129 442 922 | 966 | LTR (ERVK) | LOC105376291 | Intron | 2 |
chr9:131 414 408 | 3 392 | Retroposon (SVA) | PRRC2B | Intron | 2 |
chr9:136 074 438 | 479 | SINE (Alu) | NACC2 | Intron | 2 |
chr9:262 447 | 323 | SINE (Alu) | DOCK8 | Intron | 2 |
chr9:848 895 | 334 | SINE (Alu) | DMRT1 | Intron | 2 |
chr10:6 206 499 | 76 | Retroposon (SVA) | PFKFB3 | Intron | 2 |
chr10:6 206 834 | 110 | Retroposon (SVA) | PFKFB3 | Intron | 2 |
chr10:6 229 148 | 313 | SINE (Alu) | PFKFB3 | Intron | 2 |
chr10:9 862 428 | 325 | SINE (Alu) | LINC02663 | Intron | 2 |
chr10:11 942 951 | 322 | SINE (Alu) | UPF2 | Intron | 2 |
chr10:12 625 627 | 324 | SINE (Alu) | CAMK1D | Intron | 2 |
chr10:14 442 801 | 327 | SINE (Alu) | FRMD4A | Intron | 2 |
chr10:21 057 588 | 49 | SINE (Alu) | NEBL | Intron | 2 |
chr10:24 656 758 | 304 | Retroposon (SVA) | ARHGAP21 | Intron | 1 |
chr10:25 198 984 | 334 | SINE (Alu) | GPR158 | Intron | 2 |
chr10:25 418 756 | 6 044 | LINE (L1) | GPR158 | Intron | 2 |
chr10:25 668 385 | 326 | SINE (Alu) | LINC00836 | Intron | 2 |
chr10:25 937 005 | 320 | SINE (Alu) | MYO3A | Intron | 2 |
chr10:26 564 035 | 318 | SINE (Alu) | APBB1IP | Intron | 2 |
chr10:26 587 715 | 268 | SINE (Alu) | LINC03028 | Intron | 1 |
chr10:26 672 154 | 180 | SINE (Alu) | SELENOOLP | Intron | 2 |
chr10:28 813 597 | 315 | SINE (Alu) | LINC01517 | Intron | 2 |
chr10:28 816 354 | 312 | SINE (Alu) | LINC01517 | Intron | 2 |
chr10:29 729 670 | 173 | SINE (Alu) | SVIL | Intron | 2 |
chr10:32 647 469 | 54 | SINE (Alu) | CCDC7 | Intron | 2 |
chr10:34 256 742 | 315 | SINE (Alu) | PARD3 | Intron | 2 |
chr10:42 754 636 | 324 | SINE (Alu) | LOC283028 | Promoter | 2 |
chr10:46 647 422 | 322 | SINE (Alu) | SHLD2P1 | Intron | 2 |
chr10:46 876 544 | 302 | SINE (Alu) | FRMPD2B | Promoter | 2 |
chr10:46 876 544 | 302 | SINE (Alu) | FRMPD2B | Intron | 2 |
chr10:50 479 035 | 342 | SINE (Alu) | SGMS1 | Intron | 2 |
chr10:52 707 167 | 322 | SINE (Alu) | LNCAROD | Intron | 2 |
chr10:54 167 771 | 82 | LTR (ERV1) | PCDH15 | Intron | 2 |
chr10:54 223 519 | 325 | SINE (Alu) | PCDH15 | Intron | 2 |
chr10:55 002 597 | 62 | LTR (ERV1) | PCDH15 | Intron | 2 |
chr10:58 757 476 | 317 | SINE (Alu) | BICC1 | Intron | 2 |
chr10:59 225 142 | 323 | SINE (Alu) | PHYHIPL | Intron | 2 |
chr10:60 365 085 | 294 | SINE (Alu) | ANK3 | Intron | 2 |
chr10:65 671 223 | 326 | SINE (Alu) | LINC01515 | Intron | 2 |
chr10:66 576 999 | 327 | SINE (Alu) | CTNNA3 | Intron | 2 |
chr10:68 235 132 | 326 | SINE (Alu) | LINC02640 | Intron | 2 |
chr10:68 524 360 | 314 | SINE (Alu) | SLC25A16 | Intron | 2 |
chr10:69 850 406 | 317 | SINE (Alu) | COL13A1 | Intron | 2 |
chr10:70 407 971 | 370 | Retroposon (SVA) | EIF4EBP2 | Intron | 2 |
chr10:70 845 655 | 316 | SINE (Alu) | SGPL1 | Intron | 2 |
chr10:71 433 771 | 327 | SINE (Alu) | CDH23 | Intron | 2 |
chr10:74 470 576 | 142 | LINE (L1) | ADK | Intron | 2 |
chr10:75 333 727 | 146 | Retroposon (SVA) | ZNF503-AS1 | Intron | 1 |
chr10:78 310 298 | 186 | SINE (Alu) | LOC105378375 | Intron | 2 |
chr10:80 543 915 | 208 | LTR (ERV1) | SH2D4B | Intron | 1 |
chr10:84 223 486 | 321 | SINE (Alu) | LRIT2 | Intron | 2 |
chr10:86 016 234 | 309 | SINE (Alu) | GRID1 | Intron | 2 |
chr10:87 689 317 | 221 | SINE (Alu) | PAPSS2 | Intron | 1 |
chr10:89 350 312 | 110 | SINE (Alu) | IFIT3 | Intron | 2 |
chr10:90 087 413 | 55 | LTR (ERV1) | LINC01374 | Intron | 2 |
chr10:90 455 298 | 313 | SINE (Alu) | LINC02653 | Intron | 2 |
chr10:90 467 738 | 317 | SINE (Alu) | LINC02653 | Intron | 2 |
chr10:92 975 822 | 224 | Retroposon (SVA) | EXOC6 | Intron | 2 |
chr10:94 824 978 | 395 | LINE (L1) | CYP2C19 | Intron | 2 |
chr10:95 908 766 | 315 | SINE (Alu) | ENTPD1-AS1 | Promoter | 2 |
chr10:95 908 766 | 315 | SINE (Alu) | CC2D2B | Intron | 2 |
chr10:99 838 925 | 581 | Retroposon (SVA) | ABCC2 | Intron | 1 |
chr10:101 886 348 | 303 | SINE (Alu) | ARMH3 | Intron | 2 |
chr10:101 975 999 | 322 | SINE (Alu) | ARMH3 | Intron | 2 |
chr10:102 036 205 | 141 | Retroposon (SVA) | ARMH3 | Intron | 2 |
chr10:104 057 438 | 192 | SINE (Alu) | COL17A1 | Intron | 2 |
chr10:105 095 699 | 312 | SINE (Alu) | SORCS3 | Intron | 2 |
chr10:110 251 006 | 310 | SINE (Alu) | MXI1 | Intron | 2 |
chr10:112 314 098 | 311 | SINE (Alu) | GUCY2GP | Intron | 2 |
chr10:122 804 291 | 333 | SINE (Alu) | DMBT1L1 | Intron | 2 |
chr10:122 976 472 | 318 | SINE (Alu) | PSTK | Intron | 2 |
chr10:127 392 027 | 314 | SINE (Alu) | DOCK1 | Intron | 2 |
chr10:130 096 568 | 97 | LINE (L1) | C10orf143 | Intron | 2 |
chr10:130 347 306 | 321 | SINE (Alu) | LINC02646 | Intron | 2 |
chr10:133 217 518 | 117 | SINE (Alu) | KNDC1 | Intron | 2 |
chr11:1 576 988 | 66 | SINE (Alu) | KRTAP5-AS1 | Intron | 2 |
chr11:2 749 569 | 123 | SINE (Alu) | KCNQ1 | Intron | 2 |
chr11:4 729 983 | 332 | SINE (Alu) | MMP26 | Intron | 2 |
chr11:4 886 716 | 232 | SINE (Alu) | MMP26 | Intron | 2 |
chr11:5 863 905 | 318 | SINE (Alu) | TRIM5 | Intron | 2 |
chr11:7 331 217 | 328 | SINE (Alu) | SYT9 | Intron | 2 |
chr11:7 591 452 | 321 | SINE (Alu) | PPFIBP2 | Intron | 2 |
chr11:8 424 808 | 318 | SINE (Alu) | STK33 | Intron | 2 |
chr11:8 865 752 | 319 | SINE (Alu) | DENND2B | Intron | 2 |
chr11:13 791 469 | 335 | SINE (Alu) | LINC02548 | Intron | 2 |
chr11:15 998 427 | 322 | SINE (Alu) | SOX6 | Intron | 2 |
chr11:16 888 339 | 142 | Retroposon (SVA) | PLEKHA7 | Intron | 1 |
chr11:19 860 077 | 224 | Retroposon (SVA) | NAV2 | Intron | 2 |
chr11:22 241 253 | 123 | LINE (L1) | ANO5 | Intron | 2 |
chr11:22 243 730 | 1 119 | LINE (L1) | ANO5 | Intron | 1 |
chr11:26 271 711 | 299 | SINE (Alu) | ANO3 | Intron | 2 |
chr11:33 653 937 | 317 | SINE (Alu) | KIAA1549L | Intron | 2 |
chr11:41 145 483 | 312 | LTR (ERV1) | LRRC4C | Intron | 2 |
chr11:45 738 485 | 275 | Retroposon (SVA) | LOC100507384 | Intron | 2 |
chr11:47 299 622 | 52 | SINE (Alu) | MADD | Intron | 2 |
chr11:47 785 087 | 291 | SINE (Alu) | NUP160 | Intron | 2 |
chr11:49 634 261 | 300 | SINE (Alu) | GRM5P1 | Intron | 2 |
chr11:58 404 363 | 1 494 | LINE (L1) | OR5B3 | Intron | 2 |
chr11:59 645 320 | 382 | Retroposon (SVA) | PATL1 | Intron | 2 |
chr11:63 893 356 | 258 | LINE (L1) | MARK2 | Intron | 2 |
chr11:64 161 757 | 135 | SINE (Alu) | MACROD1 | Intron | 2 |
chr11:65 239 594 | 127 | Retroposon (SVA) | SLC22A20P | Intron | 1 |
chr11:67 222 629 | 532 | Retroposon (SVA) | KDM2A | Intron | 2 |
chr11:74 270 503 | 262 | SINE (Alu) | P4HA3 | Promoter | 2 |
chr11:74 270 503 | 262 | SINE (Alu) | P4HA3 | Intron | 2 |
chr11:74 353 855 | 75 | Retroposon (SVA) | PGM2L1 | Intron | 2 |
chr11:74 556 415 | 56 | SINE (Alu) | POLD3 | Intron | 2 |
chr11:74 656 964 | 91 | LINE (L1) | POLD3 | Intron | 2 |
chr11:76 619 299 | 602 | Retroposon (SVA) | LINC02757 | Intron | 2 |
chr11:77 098 714 | 222 | Retroposon (SVA) | CAPN5 | Intron | 2 |
chr11:77 279 524 | 313 | SINE (Alu) | GDPD4 | Intron | 2 |
chr11:78 879 312 | 712 | Retroposon (SVA) | TENM4 | Intron | 2 |
chr11:82 182 179 | 92 | Retroposon (SVA) | MIR4300HG | Intron | 2 |
chr11:83 018 315 | 60 | LINE (L1) | RAB30 | Intron | 2 |
chr11:87 154 955 | 166 | LINE (L1) | TMEM135 | Intron | 1 |
chr11:89 824 135 | 56 | LINE (L1) | LOC642414 | Intron | 1 |
chr11:90 267 331 | 185 | LINE (L1) | DISC1FP1 | Intron | 2 |
chr11:92 875 310 | 312 | SINE (Alu) | FAT3 | Intron | 2 |
chr11:96 289 863 | 337 | SINE (Alu) | MAML2 | Intron | 2 |
chr11:99 858 677 | 325 | SINE (Alu) | CNTN5 | Intron | 2 |
chr11:100 910 650 | 323 | SINE (Alu) | ARHGAP42 | Intron | 2 |
chr11:102 477 579 | 220 | SINE (Alu) | LOC102723838 | Intron | 2 |
chr11:103 330 537 | 322 | SINE (Alu) | DYNC2H1 | Intron | 2 |
chr11:103 921 859 | 326 | SINE (Alu) | PDGFD | Intron | 2 |
chr11:104 915 862 | 321 | SINE (Alu) | CASP4LP | Intron | 2 |
chr11:117 251 250 | 86 | Retroposon (SVA) | RNF214 | Intron | 2 |
chr11:119 253 538 | 265 | Retroposon (SVA) | CBL | Intron | 2 |
chr11:127 033 276 | 330 | SINE (Alu) | LOC101929473 | Intron | 2 |
chr11:130 178 391 | 127 | LTR (ERVL) | ST14 | Intron | 2 |
chr11:134 435 746 | 316 | LINE (L1) | B3GAT1-DT | Promoter | 2 |
chr11:134 435 746 | 316 | LINE (L1) | B3GAT1-DT | Intron | 2 |
chr11:428 013 | 320 | SINE (Alu) | ANO9 | Intron | 2 |
chr11:696 721 | 134 | SINE (Alu) | EPS8L2 | Intron | 2 |
chr12:1 543 322 | 423 | SINE (Alu) | WNT5B | Intron | 2 |
chr12:4 661 707 | 310 | SINE (Alu) | NDUFA9 | Intron | 2 |
chr12:5 660 425 | 298 | SINE (Alu) | ANO2 | Intron | 2 |
chr12:8 184 242 | 413 | Retroposon (SVA) | ZNF705A | Intron | 2 |
chr12:9 349 116 | 79 | Retroposon (SVA) | LINC02367 | Intron | 2 |
chr12:10 081 587 | 318 | SINE (Alu) | CLEC1A | Intron | 2 |
chr12:10 808 238 | 287 | SINE (Alu) | TAS2R8 | Promoter | 2 |
chr12:11 026 423 | 307 | SINE (Alu) | PRH1-PRR4 | Intron | 2 |
chr12:11 092 597 | 132 | LTR (ERV1) | TAS2R43 | Promoter | 1 |
chr12:11 092 597 | 132 | LTR (ERV1) | PRH1-PRR4 | Intron | 1 |
chr12:12 780 744 | 1 779 | LINE (L1) | APOLD1 | Intron | 2 |
chr12:18 215 860 | 319 | SINE (Alu) | RERGL | Intron | 2 |
chr12:19 653 272 | 288 | SINE (Alu) | AEBP2 | Intron | 2 |
chr12:20 853 921 | 319 | SINE (Alu) | SLCO1B3 | Intron | 2 |
chr12:21 933 008 | 332 | SINE (Alu) | ABCC9 | Intron | 2 |
chr12:24 298 781 | 318 | SINE (Alu) | SOX5 | Intron | 2 |
chr12:24 365 676 | 322 | SINE (Alu) | SOX5 | Intron | 2 |
chr12:27 711 861 | 314 | SINE (Alu) | MRPS35 | Intron | 2 |
chr12:28 285 662 | 314 | SINE (Alu) | CCDC91 | Intron | 2 |
chr12:29 670 962 | 312 | SINE (Alu) | TMTC1 | Intron | 2 |
chr12:31 650 024 | 315 | SINE (Alu) | ETFBKMT | Intron | 2 |
chr12:31 923 477 | 315 | SINE (Alu) | LINC02422 | Intron | 2 |
chr12:32 205 714 | 332 | SINE (Alu) | BICD1 | Intron | 2 |
chr12:32 270 114 | 317 | SINE (Alu) | BICD1 | Intron | 2 |
chr12:40 438 982 | 305 | SINE (Alu) | MUC19 | Intron | 2 |
chr12:43 524 175 | 1 073 | LINE (L1) | ADAMTS20 | Intron | 2 |
chr12:47 918 691 | 320 | SINE (Alu) | VDR | Intron | 2 |
chr12:48 842 516 | 125 | Retroposon (SVA) | DDX23 | Intron | 1 |
chr12:48 842 675 | 127 | Retroposon (SVA) | DDX23 | Intron | 1 |
chr12:50 604 178 | 3 150 | Retroposon (SVA) | DIP2B | Intron | 2 |
chr12:50 776 325 | 307 | SINE (Alu) | ATF1 | Intron | 2 |
chr12:56 075 811 | 182 | Retroposon (SVA) | ERBB3 | Promoter | 1 |
chr12:56 558 296 | 304 | SINE (Alu) | RBMS2 | Intron | 2 |
chr12:64 029 802 | 87 | SINE (Alu) | SRGAP1 | Intron | 2 |
chr12:64 204 038 | 84 | LINE (L1) | KICS2 | Intron | 2 |
chr12:64 783 846 | 187 | SINE (Alu) | TBC1D30 | Intron | 2 |
chr12:66 617 787 | 329 | SINE (Alu) | GRIP1 | Intron | 2 |
chr12:69 583 782 | 343 | SINE (Alu) | MIR3913-2 | Promoter | 2 |
chr12:69 728 845 | 326 | SINE (Alu) | LOC101928002 | Intron | 2 |
chr12:70 086 432 | 62 | LTR (ERV1) | PRANCR | Intron | 1 |
chr12:71 131 684 | 320 | SINE (Alu) | TSPAN8 | Intron | 2 |
chr12:78 003 152 | 327 | SINE (Alu) | NAV3 | Intron | 2 |
chr12:85 112 496 | 780 | LINE (L1) | LRRIQ1 | Intron | 2 |
chr12:86 811 026 | 109 | LINE (L1) | MGAT4C | Intron | 2 |
chr12:95 907 463 | 50 | Retroposon (SVA) | CCDC38 | Intron | 2 |
chr12:99 387 859 | 178 | SINE (Alu) | ANKS1B | Intron | 2 |
chr12:100 294 427 | 196 | Retroposon (SVA) | SCYL2 | Intron | 1 |
chr12:101 484 137 | 2 731 | Retroposon (SVA) | SPIC | Intron | 2 |
chr12:104 923 205 | 186 | SINE (Alu) | SLC41A2 | Intron | 2 |
chr12:116 733 345 | 170 | SINE (Alu) | SPRING1 | Intron | 2 |
chr12:117 749 119 | 3 757 | LINE (L1) | KSR2 | Intron | 2 |
chr12:122 237 736 | 78 | SINE (Alu) | VPS33A | Intron | 2 |
chr12:124 073 310 | 308 | SINE (Alu) | ZNF664 | Intron | 2 |
chr12:126 318 381 | 6 044 | LINE (L1) | LINC02350 | Intron | 2 |
chr12:126 405 316 | 330 | SINE (Alu) | LINC02350 | Intron | 2 |
chr12:131 926 421 | 80 | Retroposon (SVA) | LOC107984455 | Intron | 1 |
chr12:132 789 701 | 56 | SINE (Alu) | GOLGA3 | Intron | 1 |
chr12:132 868 562 | 181 | SINE (Alu) | CHFR | Intron | 1 |
chr12:132 892 413 | 238 | SINE (Alu) | CHFR | Intron | 2 |
chr12:132 935 638 | 124 | SINE (Alu) | CHFR | Intron | 2 |
chr12:132 939 900 | 260 | LTR (ERV1) | CHFR | Intron | 1 |
chr12:676 192 | 133 | SINE (Alu) | LINC02455 | Intron | 2 |
chr12:947 963 | 322 | SINE (Alu) | RAD52 | Intron | 2 |
chr13:18 849 237 | 324 | SINE (Alu) | ANKRD20A9P | Intron | 2 |
chr13:21 320 624 | 287 | SINE (Alu) | MIPEPP3 | Intron | 2 |
chr13:21 448 212 | 145 | Retroposon (SVA) | ZDHHC20 | Intron | 2 |
chr13:21 448 382 | 77 | Retroposon (SVA) | ZDHHC20 | Intron | 2 |
chr13:24 046 535 | 340 | SINE (Alu) | SPATA13 | Intron | 2 |
chr13:24 937 860 | 322 | SINE (Alu) | TPTE2P1 | Intron | 2 |
chr13:25 878 480 | 142 | LTR (ERV1) | ATP8A2 | Intron | 2 |
chr13:28 964 736 | 319 | SINE (Alu) | MTUS2 | Intron | 2 |
chr13:28 990 621 | 67 | LTR (ERV1) | MTUS2 | Intron | 2 |
chr13:34 541 017 | 96 | Retroposon (SVA) | LINC02343 | Intron | 2 |
chr13:38 878 388 | 315 | SINE (Alu) | FREM2 | Intron | 2 |
chr13:40 955 542 | 97 | Retroposon (SVA) | ELF1 | Intron | 2 |
chr13:41 881 714 | 126 | Retroposon (SVA) | VWA8 | Intron | 2 |
chr13:42 197 253 | 391 | LINE (L1) | DGKH | Intron | 2 |
chr13:42 365 942 | 336 | SINE (Alu) | LINC02341 | Intron | 1 |
chr13:42 476 441 | 73 | Retroposon (SVA) | LINC02341 | Intron | 1 |
chr13:43 416 183 | 444 | Retroposon (SVA) | ENOX1 | Intron | 2 |
chr13:45 485 419 | 767 | Retroposon (SVA) | COG3 | Intron | 1 |
chr13:46 073 596 | 309 | SINE (Alu) | CPB2-AS1 | Intron | 2 |
chr13:46 470 173 | 298 | SINE (Alu) | LINC01198 | Promoter | 2 |
chr13:46 470 173 | 298 | SINE (Alu) | LINC01198 | Intron | 2 |
chr13:50 337 937 | 286 | SINE (Alu) | DLEU1 | Intron | 2 |
chr13:60 037 032 | 130 | LINE (L1) | DIAPH3-AS1 | Intron | 2 |
chr13:60 715 401 | 389 | LINE (L1) | LINC00378 | Intron | 2 |
chr13:60 758 288 | 311 | SINE (Alu) | LINC00378 | Intron | 2 |
chr13:60 888 199 | 6 032 | LINE (L1) | LINC00378 | Intron | 2 |
chr13:67 329 321 | 238 | SINE (Alu) | LINC00364 | Intron | 2 |
chr13:78 010 527 | 313 | SINE (Alu) | OBI1-AS1 | Intron | 2 |
chr13:78 077 535 | 314 | SINE (Alu) | OBI1-AS1 | Intron | 2 |
chr13:78 185 608 | 327 | SINE (Alu) | OBI1-AS1 | Intron | 2 |
chr13:80 948 934 | 328 | SINE (Alu) | LOC105370278 | Intron | 2 |
chr13:84 899 424 | 221 | SINE (Alu) | LOC105370290 | Intron | 2 |
chr13:89 749 575 | 326 | SINE (Alu) | LOC107984621 | Intron | 2 |
chr13:91 609 018 | 322 | SINE (Alu) | GPC5 | Intron | 2 |
chr13:91 861 711 | 295 | SINE (Alu) | GPC5 | Intron | 2 |
chr13:92 172 972 | 321 | SINE (Alu) | GPC5 | Intron | 2 |
chr13:92 538 791 | 212 | LINE (L1) | GPC5 | Intron | 2 |
chr13:92 587 527 | 320 | SINE (Alu) | GPC5 | Intron | 2 |
chr13:98 151 042 | 326 | SINE (Alu) | FARP1 | Intron | 2 |
chr13:100 883 706 | 315 | SINE (Alu) | NALCN-AS1 | Intron | 2 |
chr13:101 737 015 | 334 | SINE (Alu) | FGF14 | Intron | 2 |
chr13:110 424 450 | 318 | SINE (Alu) | COL4A2 | Promoter | 2 |
chr13:110 424 450 | 318 | SINE (Alu) | COL4A2 | Intron | 2 |
chr13:110 674 419 | 325 | SINE (Alu) | CARS2 | Intron | 2 |
chr13:110 959 391 | 247 | SINE (Alu) | LOC105370364 | Intron | 2 |
chr13:112 678 489 | 81 | Retroposon (SVA) | ATP11AUN | Intron | 2 |
chr13:112 866 638 | 313 | SINE (Alu) | ATP11A | Intron | 2 |
chr13:112 937 994 | 217 | LTR (ERV1) | MCF2L | Intron | 1 |
chr13:113 357 053 | 132 | SINE (Alu) | GRTP1-AS1 | Intron | 2 |
chr13:113 961 471 | 316 | SINE (Alu) | C13orf46 | Intron | 2 |
chr14:20 016 135 | 351 | SINE (Alu) | OR4K14 | Intron | 2 |
chr14:21 573 514 | 327 | SINE (Alu) | OR10G3 | Intron | 2 |
chr14:22 637 543 | 523 | Retroposon (SVA) | OR6J1 | Intron | 1 |
chr14:23 975 026 | 311 | LINE (L1) | DHRS4L2 | Intron | 2 |
chr14:24 212 676 | 164 | SINE (Alu) | CHMP4A | Promoter | 1 |
chr14:24 212 676 | 164 | SINE (Alu) | TM9SF1 | Intron | 1 |
chr14:24 473 723 | 118 | LTR (ERV1) | LOC101927045 | Intron | 2 |
chr14:27 832 044 | 438 | LINE (L1) | MIR3171HG | Intron | 2 |
chr14:30 712 057 | 330 | SINE (Alu) | SCFD1 | Intron | 2 |
chr14:30 975 089 | 307 | SINE (Alu) | STRN3 | Intron | 2 |
chr14:34 024 131 | 313 | SINE (Alu) | LOC102724945 | Intron | 2 |
chr14:37 555 345 | 126 | Retroposon (SVA) | MIPOL1 | Intron | 2 |
chr14:39 843 742 | 321 | SINE (Alu) | LOC105370462 | Intron | 2 |
chr14:40 110 466 | 324 | SINE (Alu) | LOC105370462 | Intron | 2 |
chr14:40 123 223 | 131 | SINE (Alu) | LOC105370462 | Intron | 2 |
chr14:44 053 098 | 307 | SINE (Alu) | LINC02307 | Intron | 2 |
chr14:51 252 267 | 311 | SINE (Alu) | TMX1 | Intron | 2 |
chr14:52 837 362 | 55 | LTR (ERV1) | LOC105370500 | Intron | 2 |
chr14:53 311 386 | 324 | SINE (Alu) | LOC105370502 | Intron | 2 |
chr14:55 329 133 | 310 | SINE (Alu) | FBXO34 | Intron | 2 |
chr14:57 041 271 | 329 | SINE (Alu) | OTX2-AS1 | Intron | 2 |
chr14:59 987 435 | 326 | SINE (Alu) | LRRC9 | Intron | 2 |
chr14:60 065 669 | 319 | SINE (Alu) | PCNX4-DT | Intron | 2 |
chr14:60 108 770 | 313 | SINE (Alu) | PCNX4 | Intron | 2 |
chr14:62 759 564 | 331 | SINE (Alu) | KCNH5 | Intron | 2 |
chr14:64 038 277 | 388 | Retroposon (SVA) | SYNE2 | Intron | 2 |
chr14:70 397 976 | 57 | LTR (ERV1) | SYNJ2BP-COX16 | Intron | 2 |
chr14:70 813 500 | 127 | SINE (Alu) | MAP3K9-DT | Intron | 2 |
chr14:73 353 583 | 134 | SINE (Alu) | NUMB | Intron | 2 |
chr14:75 032 865 | 321 | SINE (Alu) | MLH3 | Intron | 2 |
chr14:78 516 349 | 330 | SINE (Alu) | NRXN3 | Intron | 2 |
chr14:80 488 209 | 1 887 | LINE (L1) | CEP128 | Intron | 2 |
chr14:80 495 706 | 339 | SINE (Alu) | CEP128 | Intron | 2 |
chr14:81 320 428 | 2 695 | Retroposon (SVA) | STON2 | Intron | 2 |
chr14:85 915 450 | 5 707 | LINE (L1) | LINC02328 | Intron | 2 |
chr14:88 276 264 | 297 | SINE (Alu) | KCNK10 | Intron | 2 |
chr14:89 608 202 | 143 | SINE (Alu) | FOXN3 | Intron | 1 |
chr14:89 788 452 | 266 | SINE (Alu) | FOXN3 | Intron | 2 |
chr14:89 788 466 | 133 | SINE (Alu) | FOXN3 | Intron | 2 |
chr14:90 797 289 | 171 | SINE (Alu) | TTC7B | Intron | 2 |
chr14:91 658 708 | 316 | SINE (Alu) | CATSPERB | Intron | 2 |
chr14:100 345 058 | 95 | Retroposon (SVA) | WARS1 | Intron | 2 |
chr15:25 490 505 | 321 | SINE (Alu) | LINC02250 | Intron | 2 |
chr15:27 520 633 | 323 | SINE (Alu) | GABRG3 | Intron | 2 |
chr15:27 930 643 | 392 | LINE (L1) | OCA2 | Intron | 2 |
chr15:30 674 565 | 185 | SINE (Alu) | LOC100288637 | Intron | 2 |
chr15:32 821 095 | 312 | SINE (Alu) | FMN1 | Intron | 2 |
chr15:34 346 662 | 81 | SINE (Alu) | NUTM1 | Intron | 2 |
chr15:35 804 106 | 310 | SINE (Alu) | DPH6-DT | Intron | 2 |
chr15:37 415 687 | 667 | LINE (L1) | LOC105370772 | Intron | 2 |
chr15:38 477 226 | 335 | SINE (Alu) | FAM98B | Intron | 2 |
chr15:39 894 051 | 98 | Retroposon (SVA) | GPR176 | Intron | 2 |
chr15:40 422 765 | 179 | SINE (Alu) | IVD | Intron | 2 |
chr15:43 076 793 | 126 | Retroposon (SVA) | UBR1 | Intron | 2 |
chr15:45 277 713 | 311 | SINE (Alu) | SLC28A2-AS1 | Intron | 2 |
chr15:47 279 101 | 87 | LINE (L1) | SEMA6D | Intron | 2 |
chr15:60 365 043 | 311 | SINE (Alu) | ANXA2 | Intron | 2 |
chr15:60 924 332 | 322 | SINE (Alu) | RORA | Intron | 2 |
chr15:66 375 798 | 323 | SINE (Alu) | TIPIN | Intron | 2 |
chr15:67 352 554 | 338 | SINE (Alu) | IQCH | Intron | 2 |
chr15:68 395 669 | 4 441 | LINE (L1) | ITGA11 | Intron | 2 |
chr15:70 861 401 | 310 | SINE (Alu) | LRRC49 | Intron | 2 |
chr15:71 757 533 | 132 | SINE (Alu) | THSD4 | Intron | 2 |
chr15:72 347 195 | 319 | SINE (Alu) | HEXA | Promoter | 2 |
chr15:72 347 195 | 319 | SINE (Alu) | LOC105370887 | Intron | 2 |
chr15:73 690 968 | 322 | SINE (Alu) | CD276 | Intron | 2 |
chr15:75 481 597 | 400 | Retroposon (SVA) | PTPN9 | Intron | 1 |
chr15:75 503 556 | 192 | Retroposon (SVA) | PTPN9 | Intron | 2 |
chr15:75 504 155 | 142 | Retroposon (SVA) | PTPN9 | Intron | 2 |
chr15:76 230 513 | 82 | SINE (Alu) | ETFA | Intron | 2 |
chr15:77 469 236 | 324 | SINE (Alu) | HMG20A | Intron | 2 |
chr15:78 132 274 | 163 | SINE (Alu) | CIB2 | Promoter | 2 |
chr15:78 132 274 | 163 | SINE (Alu) | IDH3A | Intron | 2 |
chr15:78 644 312 | 319 | SINE (Alu) | CHRNB4 | Intron | 2 |
chr15:80 355 807 | 93 | SINE (Alu) | ARNT2-DT | Intron | 2 |
chr15:80 370 223 | 315 | SINE (Alu) | ARNT2-DT | Intron | 2 |
chr15:81 100 242 | 315 | SINE (Alu) | CFAP161 | Intron | 2 |
chr15:84 854 228 | 317 | SINE (Alu) | ALPK3 | Intron | 2 |
chr15:84 900 312 | 68 | SINE (Alu) | SLC28A1 | Intron | 1 |
chr15:85 681 718 | 329 | SINE (Alu) | AKAP13 | Promoter | 2 |
chr15:85 681 718 | 329 | SINE (Alu) | AKAP13 | Intron | 2 |
chr15:89 854 811 | 78 | Retroposon (SVA) | AP3S2 | Intron | 1 |
chr15:93 023 921 | 317 | SINE (Alu) | CHD2 | Intron | 2 |
chr15:93 292 547 | 316 | SINE (Alu) | LOC105370982 | Intron | 2 |
chr15:94 276 660 | 304 | SINE (Alu) | MCTP2 | Intron | 2 |
chr15:100 270 770 | 308 | SINE (Alu) | ADAMTS17 | Intron | 2 |
chr15:100 272 601 | 317 | SINE (Alu) | ADAMTS17 | Intron | 2 |
chr16:1 599 469 | 805 | Retroposon (SVA) | LOC105371046 | Intron | 2 |
chr16:2 052 218 | 328 | SINE (Alu) | TSC2 | Intron | 2 |
chr16:3 039 306 | 321 | SINE (Alu) | MMP25-AS1 | Intron | 2 |
chr16:5 202 370 | 223 | Retroposon (SVA) | LOC105371067 | Intron | 1 |
chr16:5 295 020 | 319 | SINE (Alu) | RBFOX1 | Intron | 2 |
chr16:6 743 824 | 1 435 | LINE (L1) | RBFOX1 | Intron | 2 |
chr16:7 176 223 | 327 | SINE (Alu) | RBFOX1 | Intron | 2 |
chr16:7 491 379 | 315 | SINE (Alu) | RBFOX1 | Intron | 2 |
chr16:11 336 032 | 294 | Retroposon (SVA) | LOC105371082 | Intron | 2 |
chr16:13 437 866 | 55 | SINE (Alu) | SHISA9 | Intron | 2 |
chr16:21 227 729 | 317 | SINE (Alu) | LOC105371123 | Intron | 2 |
chr16:24 109 272 | 488 | Retroposon (SVA) | PRKCB | Intron | 2 |
chr16:24 316 243 | 316 | SINE (Alu) | CACNG3 | Intron | 2 |
chr16:28 697 996 | 49 | Retroposon (SVA) | EIF3C | Intron | 1 |
chr16:31 105 127 | 143 | Retroposon (SVA) | BCKDK | Promoter | 2 |
chr16:56 739 527 | 819 | Retroposon (SVA) | NUP93 | Intron | 1 |
chr16:59 942 554 | 317 | SINE (Alu) | LINC02141 | Intron | 2 |
chr16:60 007 242 | 316 | SINE (Alu) | LINC02141 | Intron | 2 |
chr16:65 448 283 | 314 | SINE (Alu) | LINC00922 | Intron | 2 |
chr16:69 157 890 | 318 | SINE (Alu) | UTP4 | Intron | 2 |
chr16:69 361 930 | 323 | SINE (Alu) | TERF2 | Promoter | 2 |
chr16:69 361 930 | 323 | SINE (Alu) | TERF2 | Intron | 2 |
chr16:69 820 419 | 53 | SINE (Alu) | WWP2 | Intron | 2 |
chr16:71 733 511 | 74 | SINE (Alu) | AP1G1 | Intron | 2 |
chr16:72 695 339 | 1 624 | LINE (L1) | ZFHX3-AS1 | Intron | 2 |
chr16:79 156 823 | 327 | SINE (Alu) | WWOX | Intron | 2 |
chr16:80 183 526 | 322 | SINE (Alu) | DYNLRB2-AS1 | Intron | 2 |
chr16:82 131 072 | 300 | SINE (Alu) | HSD17B2-AS1 | Intron | 2 |
chr16:83 099 623 | 334 | SINE (Alu) | CDH13 | Intron | 2 |
chr16:83 632 754 | 331 | SINE (Alu) | CDH13 | Intron | 2 |
chr16:89 224 966 | 321 | SINE (Alu) | ZNF778 | Intron | 2 |
chr16:942 520 | 68 | LINE (L1) | LMF1 | Intron | 2 |
chr17:1 212 117 | 320 | SINE (Alu) | ABR | Intron | 2 |
chr17:2 448 174 | 125 | Retroposon (SVA) | METTL16 | Intron | 2 |
chr17:3 284 831 | 262 | SINE (Alu) | OR3A2 | Promoter | 2 |
chr17:3 284 831 | 262 | SINE (Alu) | OR3A2 | Intron | 2 |
chr17:3 544 162 | 132 | SINE (Alu) | TRPV3 | Intron | 2 |
chr17:9 269 002 | 133 | SINE (Alu) | STX8 | Intron | 2 |
chr17:11 972 684 | 57 | LTR (ERV1) | ZNF18 | Intron | 2 |
chr17:13 896 324 | 313 | SINE (Alu) | COX10-DT | Intron | 2 |
chr17:16 095 665 | 104 | Retroposon (SVA) | NCOR1 | Intron | 2 |
chr17:16 699 502 | 133 | SINE (Alu) | CCDC144A | Intron | 2 |
chr17:18 888 657 | 351 | Retroposon (SVA) | PRPSAP2 | Intron | 1 |
chr17:19 627 853 | 800 | Retroposon (SVA) | SLC47A1P2 | Intron | 2 |
chr17:20 038 316 | 2 413 | Retroposon (SVA) | SPECC1 | Intron | 2 |
chr17:20 985 239 | 96 | Retroposon (SVA) | LOC339260 | Intron | 1 |
chr17:21 292 724 | 121 | SINE (Alu) | MAP2K3 | Intron | 1 |
chr17:28 456 137 | 1 157 | Retroposon (SVA) | RSKR | Intron | 1 |
chr17:28 604 067 | 97 | Retroposon (SVA) | SPAG5-AS1 | Intron | 2 |
chr17:32 310 717 | 169 | SINE (Alu) | RHBDL3 | Intron | 2 |
chr17:32 318 457 | 184 | SINE (Alu) | RHBDL3 | Intron | 2 |
chr17:32 566 829 | 312 | SINE (Alu) | MYO1D | Intron | 2 |
chr17:42 106 634 | 107 | SINE (Alu) | DHX58 | Intron | 2 |
chr17:42 973 206 | 273 | Retroposon (SVA) | PTGES3L-AARSD1 | Intron | 2 |
chr17:43 128 193 | 125 | LTR (ERV1) | NBR2 | Intron | 2 |
chr17:43 251 404 | 194 | LTR (ERV1) | CCDC200 | Intron | 1 |
chr17:43 289 877 | 214 | LTR (ERV1) | CCDC200 | Intron | 1 |
chr17:44 181 115 | 253 | Retroposon (SVA) | ASB16-AS1 | Intron | 2 |
chr17:46 210 497 | 69 | LINE (CR1) | KANSL1 | Intron | 2 |
chr17:47 325 026 | 266 | SINE (Alu) | ITGB3 | Intron | 2 |
chr17:48 427 626 | 324 | SINE (Alu) | SKAP1 | Intron | 2 |
chr17:51 331 423 | 330 | SINE (Alu) | LINC02071 | Intron | 2 |
chr17:53 879 754 | 320 | SINE (Alu) | LOC107985001 | Intron | 2 |
chr17:56 870 207 | 295 | SINE (Alu) | TRIM25 | Intron | 2 |
chr17:57 848 853 | 310 | SINE (Alu) | MRPS23 | Intron | 2 |
chr17:57 915 231 | 320 | SINE (Alu) | LOC107985065 | Intron | 2 |
chr17:62 996 973 | 192 | SINE (Alu) | TANC2 | Intron | 2 |
chr17:63 488 528 | 289 | SINE (Alu) | ACE | Intron | 2 |
chr17:67 550 440 | 300 | SINE (Alu) | PITPNC1 | Intron | 2 |
chr17:69 879 207 | 314 | SINE (Alu) | LINC01483 | Intron | 2 |
chr17:72 701 862 | 139 | SINE (Alu) | SLC39A11 | Intron | 1 |
chr17:76 591 926 | 319 | SINE (Alu) | SNHG16 | Intron | 2 |
chr17:77 284 126 | 87 | SINE (Alu) | SEPTIN9 | Intron | 2 |
chr17:78 156 964 | 316 | SINE (Alu) | C17orf99 | Intron | 2 |
chr17:80 113 807 | 314 | SINE (Alu) | GAA | Intron | 2 |
chr17:81 146 946 | 321 | SINE (Alu) | AATK | Intron | 2 |
chr17:82 631 585 | 304 | SINE (Alu) | WDR45B | Intron | 2 |
chr17:82 802 100 | 1 407 | Retroposon (SVA) | TBCD | Intron | 2 |
chr17:572 389 | 97 | Retroposon (SVA) | VPS53 | Intron | 2 |
chr17:598 424 | 156 | Retroposon (SVA) | VPS53 | Intron | 2 |
chr17:598 874 | 394 | Retroposon (SVA) | VPS53 | Intron | 2 |
chr17:831 916 | 310 | SINE (Alu) | NXN | Intron | 2 |
chr18:1 235 778 | 322 | SINE (Alu) | LOC105371953 | Intron | 2 |
chr18:1 955 406 | 63 | LTR (ERV1) | LOC105371958 | Intron | 2 |
chr18:2 304 395 | 270 | SINE (Alu) | LOC105371956 | Intron | 2 |
chr18:6 827 331 | 96 | Retroposon (SVA) | ARHGAP28 | Intron | 1 |
chr18:10 911 126 | 317 | SINE (Alu) | PIEZO2 | Intron | 2 |
chr18:23 577 365 | 155 | LTR (ERV1) | NPC1 | Promoter | 2 |
chr18:23 577 365 | 155 | LTR (ERV1) | NPC1 | Intron | 2 |
chr18:26 958 048 | 317 | SINE (Alu) | AQP4-AS1 | Intron | 2 |
chr18:33 953 226 | 282 | SINE (Alu) | NOL4 | Intron | 2 |
chr18:49 203 113 | 1 032 | Retroposon (SVA) | DYM | Intron | 1 |
chr18:53 460 168 | 319 | SINE (Alu) | DCC | Intron | 2 |
chr18:56 689 827 | 331 | SINE (Alu) | WDR7 | Intron | 2 |
chr18:57 632 999 | 409 | Retroposon (SVA) | ATP8B1-AS1 | Intron | 1 |
chr18:57 642 331 | 497 | LTR (ERV1) | ATP8B1-AS1 | Intron | 1 |
chr18:57 642 411 | 507 | LTR (ERV1) | ATP8B1-AS1 | Intron | 1 |
chr18:57 713 754 | 142 | SINE (Alu) | LOC105372141 | Intron | 2 |
chr18:59 482 873 | 314 | SINE (Alu) | CCBE1 | Intron | 2 |
chr18:65 820 032 | 317 | SINE (Alu) | CDH7 | Intron | 2 |
chr18:68 731 922 | 315 | SINE (Alu) | CCDC102B | Intron | 2 |
chr18:68 905 255 | 332 | SINE (Alu) | CCDC102B | Intron | 2 |
chr18:69 492 815 | 314 | SINE (Alu) | DOK6 | Intron | 2 |
chr18:76 241 968 | 323 | SINE (Alu) | LOC105372209 | Intron | 2 |
chr18:76 851 079 | 311 | SINE (Alu) | ZNF236 | Promoter | 2 |
chr18:76 851 079 | 311 | SINE (Alu) | ZNF236 | Intron | 2 |
chr18:79 895 735 | 66 | LINE (L1) | KCNG2 | Intron | 2 |
chr19:1 923 899 | 133 | SINE (Alu) | SCAMP4 | Intron | 1 |
chr19:2 025 044 | 308 | SINE (Alu) | LOC107985278 | Intron | 2 |
chr19:2 183 925 | 314 | SINE (Alu) | DOT1L | Intron | 2 |
chr19:2 383 641 | 308 | SINE (Alu) | TMPRSS9 | Intron | 2 |
chr19:2 559 735 | 124 | SINE (Alu) | GNG7 | Intron | 2 |
chr19:3 287 350 | 318 | SINE (Alu) | CELF5 | Intron | 2 |
chr19:9 491 839 | 1 072 | LTR (ERVL) | ZNF560 | Intron | 2 |
chr19:10 337 271 | 309 | SINE (Alu) | ICAM3 | Intron | 2 |
chr19:12 621 718 | 128 | Retroposon (SVA) | ZNF791 | Intron | 2 |
chr19:17 722 271 | 165 | SINE (Alu) | MAP1S | Intron | 2 |
chr19:20 149 557 | 148 | Retroposon (SVA) | LOC105372310 | Intron | 2 |
chr19:20 437 085 | 77 | LTR (ERVL) | LOC105372317 | Intron | 2 |
chr19:20 563 165 | 314 | SINE (Alu) | LOC105372316 | Intron | 2 |
chr19:21 103 183 | 335 | SINE (Alu) | ZNF714 | Intron | 2 |
chr19:22 634 026 | 312 | SINE (Alu) | ZNF492 | Promoter | 2 |
chr19:22 636 885 | 307 | SINE (Alu) | ZNF492 | Intron | 2 |
chr19:23 568 276 | 576 | Retroposon (SVA) | LOC105372337 | Intron | 2 |
chr19:23 768 603 | 320 | SINE (Alu) | RPSAP58 | Intron | 2 |
chr19:23 828 490 | 1 547 | Retroposon (SVA) | RPSAP58 | Intron | 2 |
chr19:29 364 872 | 960 | LTR (ERVK) | VSTM2B-DT | Intron | 2 |
chr19:31 199 763 | 328 | SINE (Alu) | LINC01791 | Intron | 2 |
chr19:36 480 620 | 311 | SINE (Alu) | ZNF566 | Intron | 2 |
chr19:37 540 540 | 311 | SINE (Alu) | ZNF793 | Intron | 2 |
chr19:38 541 453 | 135 | SINE (Alu) | RYR1 | Intron | 2 |
chr19:39 905 477 | 311 | SINE (Alu) | FCGBP | Intron | 2 |
chr19:46 509 015 | 312 | SINE (Alu) | PPP5D1P | Intron | 2 |
chr19:53 194 287 | 202 | SINE (Alu) | ZNF665 | Promoter | 2 |
chr19:53 794 570 | 313 | SINE (Alu) | NLRP12 | Intron | 2 |
chr19:54 753 609 | 315 | SINE (Alu) | KIR2DL1 | Intron | 1 |
chr19:54 999 012 | 49 | Retroposon (SVA) | NLRP2 | Intron | 1 |
chr20:1 150 047 | 308 | SINE (Alu) | PSMF1 | Intron | 2 |
chr20:8 689 955 | 303 | SINE (Alu) | PLCB1 | Intron | 2 |
chr20:8 835 843 | 301 | SINE (Alu) | PLCB1 | Intron | 2 |
chr20:9 624 548 | 318 | SINE (Alu) | PAK5 | Intron | 2 |
chr20:9 641 462 | 118 | LTR (ERV1) | PAK5 | Intron | 2 |
chr20:9 660 318 | 287 | SINE (Alu) | PAK5 | Intron | 2 |
chr20:11 300 930 | 125 | LINE (L1) | LOC339593 | Intron | 2 |
chr20:15 125 949 | 290 | SINE (Alu) | MACROD2 | Intron | 2 |
chr20:18 689 891 | 175 | SINE (Alu) | DTD1 | Intron | 2 |
chr20:25 562 196 | 445 | Retroposon (SVA) | NINL | Intron | 2 |
chr20:26 210 320 | 323 | SINE (Alu) | MIR663AHG | Promoter | 2 |
chr20:26 210 320 | 323 | SINE (Alu) | MIR663AHG | Intron | 2 |
chr20:31 470 408 | 126 | Retroposon (SVA) | DEFB124 | Intron | 2 |
chr20:34 205 638 | 321 | SINE (Alu) | ASIP | Intron | 2 |
chr20:35 041 057 | 96 | LTR (ERVL) | TRPC4AP | Intron | 1 |
chr20:35 564 371 | 148 | SINE (Alu) | FER1L4 | Intron | 2 |
chr20:47 525 869 | 146 | Retroposon (SVA) | NCOA3 | Intron | 2 |
chr20:54 021 396 | 314 | SINE (Alu) | BCAS1 | Intron | 2 |
chr20:59 138 375 | 308 | SINE (Alu) | ZNF831 | Intron | 2 |
chr20:60 439 006 | 74 | LINE (L1) | MIR646HG | Intron | 2 |
chr20:60 600 158 | 76 | LTR (ERVL) | MIR646HG | Intron | 2 |
chr21:10 508 068 | 56 | LINE (L1) | BAGE2 | Intron | 2 |
chr21:14 980 612 | 323 | SINE (Alu) | LINC02246 | Intron | 2 |
chr21:15 556 506 | 386 | LINE (L1) | LOC101927745 | Intron | 2 |
chr21:16 398 231 | 95 | LTR (ERV1) | MIR99AHG | Intron | 1 |
chr21:18 144 980 | 3 394 | LINE (L1) | CHODL | Intron | 2 |
chr21:21 411 087 | 314 | LTR (ERVL) | NCAM2 | Intron | 2 |
chr21:24 981 910 | 322 | SINE (Alu) | LINC01692 | Intron | 2 |
chr21:32 026 204 | 319 | SINE (Alu) | HUNK | Intron | 2 |
chr21:32 428 505 | 302 | SINE (Alu) | EVA1C | Intron | 2 |
chr21:32 433 901 | 139 | SINE (Alu) | EVA1C | Intron | 2 |
chr21:32 482 933 | 67 | SINE (Alu) | EVA1C | Intron | 2 |
chr21:35 865 629 | 332 | SINE (Alu) | LOC101928269 | Intron | 2 |
chr21:37 632 243 | 321 | SINE (Alu) | KCNJ6 | Intron | 2 |
chr21:37 685 531 | 316 | SINE (Alu) | KCNJ6 | Intron | 2 |
chr21:45 622 444 | 326 | SINE (Alu) | LOC107985485 | Intron | 2 |
chr22:11 860 398 | 309 | SINE (Alu) | LOC107984037 | Intron | 2 |
chr22:17 224 399 | 332 | SINE (Alu) | ADA2 | Intron | 2 |
chr22:17 567 654 | 357 | SINE (Alu) | SLC25A18 | Intron | 2 |
chr22:18 106 942 | 188 | LTR (ERVL) | TUBA8 | Intron | 1 |
chr22:18 201 956 | 74 | SINE (Alu) | FAM230D | Intron | 1 |
chr22:19 373 921 | 124 | SINE (Alu) | HIRA | Intron | 2 |
chr22:22 644 845 | 315 | SINE (Alu) | POM121L1P | Promoter | 2 |
chr22:22 644 845 | 315 | SINE (Alu) | GGTLC2 | Intron | 2 |
chr22:24 000 536 | 323 | SINE (Alu) | GSTT4 | Intron | 2 |
chr22:26 772 985 | 453 | Retroposon (SVA) | MIATNB | Intron | 1 |
chr22:26 773 145 | 905 | Retroposon (SVA) | MIATNB | Intron | 2 |
chr22:26 773 147 | 125 | Retroposon (SVA) | MIATNB | Intron | 1 |
chr22:26 773 373 | 452 | Retroposon (SVA) | MIATNB | Intron | 1 |
chr22:28 380 048 | 320 | SINE (Alu) | TTC28 | Intron | 2 |
chr22:30 597 428 | 159 | LTR (ERV1) | PES1 | Intron | 2 |
chr22:32 682 040 | 149 | LINE (L2) | SYN3 | Intron | 2 |
chr22:33 132 511 | 316 | SINE (Alu) | LINC01640 | Intron | 2 |
chr22:34 034 609 | 325 | SINE (Alu) | LINC01643 | Intron | 2 |
chr22:40 199 779 | 320 | SINE (Alu) | TNRC6B | Intron | 2 |
chr22:40 501 145 | 128 | Retroposon (SVA) | MRTFA | Intron | 2 |
chr22:40 501 490 | 148 | Retroposon (SVA) | MRTFA | Intron | 1 |
chr22:40 537 218 | 96 | Retroposon (SVA) | MRTFA | Intron | 1 |
chr22:40 537 628 | 776 | Retroposon (SVA) | MRTFA | Intron | 1 |
chr22:41 314 923 | 312 | SINE (Alu) | ZC3H7B | Intron | 2 |
chr22:42 112 847 | 117 | LTR (ERV1) | NDUFA6-DT | Intron | 1 |
chr22:42 818 815 | 313 | SINE (Alu) | ARFGAP3 | Intron | 2 |
chr22:43 928 708 | 1 148 | LINE (L1) | PNPLA3 | Intron | 2 |
chr22:45 166 717 | 124 | SINE (Alu) | NUP50 | Intron | 2 |
chr22:49 879 740 | 216 | SINE (Alu) | ZBED4 | Intron | 2 |
chrX:1 304 189 | 333 | SINE (Alu) | CSF2RA | Intron | 2 |
chrX:1 496 843 | 135 | SINE (Alu) | P2RY8 | Intron | 2 |
chrX:6 197 435 | 114 | SINE (Alu) | NLGN4X | Intron | 2 |
chrX:16 964 930 | 124 | Retroposon (SVA) | REPS2 | Intron | 2 |
chrX:19 074 340 | 53 | SINE (Alu) | ADGRG2 | Intron | 2 |
chrX:24 709 079 | 128 | Retroposon (SVA) | POLA1 | Intron | 2 |
chrX:29 333 929 | 49 | Retroposon (SVA) | IL1RAPL1 | Intron | 2 |
chrX:33 284 732 | 306 | SINE (Alu) | DMD | Intron | 2 |
chrX:34 249 205 | 394 | LINE (L1) | LOC105373153 | Intron | 2 |
chrX:45 040 273 | 164 | Retroposon (SVA) | KDM6A | Intron | 2 |
chrX:53 967 164 | 125 | Retroposon (SVA) | PHF8 | Intron | 2 |
chrX:65 457 302 | 346 | Retroposon (SVA) | ZC3H12B | Intron | 2 |
chrX:70 350 008 | 115 | Retroposon (SVA) | KIF4A | Intron | 2 |
chrX:72 681 503 | 124 | Retroposon (SVA) | PHKA1 | Intron | 2 |
chrX:72 681 897 | 226 | Retroposon (SVA) | PHKA1 | Intron | 2 |
chrX:80 396 883 | 834 | Retroposon (SVA) | TENT5D | Intron | 1 |
chrX:84 080 389 | 1 359 | LINE (L1) | RPS6KA6 | Intron | 2 |
chrX:85 135 734 | 326 | SINE (Alu) | SATL1 | Intron | 2 |
chrX:92 170 920 | 134 | SINE (Alu) | PCDH11X | Intron | 2 |
chrX:97 069 995 | 319 | SINE (Alu) | DIAPH2 | Intron | 2 |
chrX:100 972 832 | 746 | Retroposon (SVA) | ARL13A | Intron | 2 |
chrX:107 501 516 | 133 | SINE (Alu) | FRMPD3 | Intron | 2 |
chrX:112 314 520 | 6 052 | LINE (L1) | RTL4 | Intron | 2 |
chrX:122 435 457 | 327 | SINE (Alu) | LOC101928359 | Intron | 2 |
chrX:124 128 744 | 223 | Retroposon (SVA) | STAG2 | Intron | 1 |
chrX:131 467 165 | 76 | LINE (L1) | IGSF1 | Intron | 2 |
chrX:137 034 007 | 346 | SINE (Alu) | GPR101 | Promoter | 2 |
chrX:147 992 468 | 50 | Retroposon (SVA) | FMR1NB | Intron | 1 |
chrX:147 992 492 | 800 | Retroposon (SVA) | FMR1NB | Intron | 1 |
chrX:656 846 | 236 | SINE (Alu) | SHOX | Intron | 1 |
Position | Length | Type | Gene | Annotation | Occurrences |
|---|---|---|---|---|---|
chr3:197 847 677 | 57 | DNA (TcMar) | LRCH3 | Promoter | 2 |
chr3:197 847 677 | 57 | DNA (TcMar) | LRCH3 | Intron | 2 |
chr11:13 001 659 | 81 | DNA (hAT) | RASSF10-DT | Intron | 2 |
chr11:41 072 278 | 87 | DNA (TcMar) | LRRC4C | Intron | 2 |
It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.
Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.
This section shows the result of enrichment analysis on the genes affected with TE insertions.
Barplot for enriched categories. Values on top have lower p values.
The category with lowest p value is Pyrin domain binding (1.43467e-10), and the highest (among the lowest 10) is taste receptor activity (0.01642528). The ratio is 114488184.39, i.e., they differ in 8 orders of magnitude.
ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | Count | GeneRatioCalc |
|---|---|---|---|---|---|---|---|---|
GO:0032090 | Pyrin domain binding | 10/871 | 11/20758 | 1.704e-13 | 1.435e-10 | 1.309e-10 | 10 | 0.01148 |
GO:0005085 | guanyl-nucleotide exchange factor activity | 32/871 | 245/20758 | 1.257e-08 | 5.292e-06 | 4.83e-06 | 32 | 0.03674 |
GO:0005096 | GTPase activator activity | 35/871 | 304/20758 | 6.825e-08 | 1.916e-05 | 1.748e-05 | 35 | 0.04018 |
GO:0046703 | natural killer cell lectin-like receptor binding | 8/871 | 27/20758 | 1.014e-05 | 0.002135 | 0.001948 | 8 | 0.009185 |
GO:0005216 | ion channel activity | 40/871 | 480/20758 | 3.142e-05 | 0.005292 | 0.004829 | 40 | 0.04592 |
GO:0033038 | bitter taste receptor activity | 9/871 | 44/20758 | 7.301e-05 | 0.01025 | 0.00935 | 9 | 0.01033 |
GO:0022836 | gated channel activity | 32/871 | 372/20758 | 0.0001057 | 0.01173 | 0.01071 | 32 | 0.03674 |
GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding | 13/871 | 92/20758 | 0.0001188 | 0.01173 | 0.01071 | 13 | 0.01493 |
GO:1902936 | phosphatidylinositol bisphosphate binding | 15/871 | 118/20758 | 0.0001254 | 0.01173 | 0.01071 | 15 | 0.01722 |
GO:0008527 | taste receptor activity | 9/871 | 50/20758 | 0.000206 | 0.01643 | 0.01499 | 9 | 0.01033 |
GO:0035091 | phosphatidylinositol binding | 26/871 | 288/20758 | 0.0002146 | 0.01643 | 0.01499 | 26 | 0.02985 |
GO:0030165 | PDZ domain binding | 12/871 | 89/20758 | 0.0003357 | 0.02356 | 0.0215 | 12 | 0.01378 |
GO:0140327 | flippase activity | 5/871 | 17/20758 | 0.0005218 | 0.0338 | 0.03084 | 5 | 0.005741 |
GO:0042578 | phosphoric ester hydrolase activity | 31/871 | 396/20758 | 0.0006866 | 0.0413 | 0.03769 | 31 | 0.03559 |
GO:0003779 | actin binding | 35/871 | 471/20758 | 0.0008205 | 0.04605 | 0.04203 | 35 | 0.04018 |
GO:0004115 | 3',5'-cyclic-AMP phosphodiesterase activity | 5/871 | 19/20758 | 0.0009144 | 0.04812 | 0.04392 | 5 | 0.005741 |
GO:0005253 | anion channel activity | 12/871 | 101/20758 | 0.001067 | 0.05254 | 0.04795 | 12 | 0.01378 |
GO:0050811 | GABA receptor binding | 5/871 | 20/20758 | 0.001177 | 0.05254 | 0.04795 | 5 | 0.005741 |
GO:0045296 | cadherin binding | 28/871 | 357/20758 | 0.001185 | 0.05254 | 0.04795 | 28 | 0.03215 |
GO:0005516 | calmodulin binding | 19/871 | 210/20758 | 0.001411 | 0.05712 | 0.05213 | 19 | 0.02181 |
GO:0005001 | transmembrane receptor protein tyrosine phosphatase activity | 5/871 | 21/20758 | 0.001492 | 0.05712 | 0.05213 | 5 | 0.005741 |
GO:0019198 | transmembrane receptor protein phosphatase activity | 5/871 | 21/20758 | 0.001492 | 0.05712 | 0.05213 | 5 | 0.005741 |
GO:0008081 | phosphoric diester hydrolase activity | 11/871 | 95/20758 | 0.002093 | 0.07406 | 0.06759 | 11 | 0.01263 |
GO:0070679 | inositol 1,4,5 trisphosphate binding | 4/871 | 14/20758 | 0.002199 | 0.07406 | 0.06759 | 4 | 0.004592 |
GO:0140333 | glycerophospholipid flippase activity | 4/871 | 14/20758 | 0.002199 | 0.07406 | 0.06759 | 4 | 0.004592 |
GO:0008093 | cytoskeletal anchor activity | 5/871 | 23/20758 | 0.002302 | 0.07455 | 0.06804 | 5 | 0.005741 |
GO:0005262 | calcium channel activity | 13/871 | 126/20758 | 0.002467 | 0.07693 | 0.07021 | 13 | 0.01493 |
GO:1901981 | phosphatidylinositol phosphate binding | 17/871 | 191/20758 | 0.002913 | 0.08759 | 0.07994 | 17 | 0.01952 |
GO:0140303 | intramembrane lipid transporter activity | 7/871 | 47/20758 | 0.003247 | 0.09428 | 0.08604 | 7 | 0.008037 |
GO:0022839 | ion gated channel activity | 7/871 | 48/20758 | 0.003666 | 0.1023 | 0.09333 | 7 | 0.008037 |
GO:0005254 | chloride channel activity | 10/871 | 88/20758 | 0.003765 | 0.1023 | 0.09333 | 10 | 0.01148 |
GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | 5/871 | 26/20758 | 0.004056 | 0.1035 | 0.09444 | 5 | 0.005741 |
GO:0008266 | poly(U) RNA binding | 5/871 | 26/20758 | 0.004056 | 0.1035 | 0.09444 | 5 | 0.005741 |
GO:0046873 | metal ion transmembrane transporter activity | 32/871 | 466/20758 | 0.00454 | 0.1124 | 0.1026 | 32 | 0.03674 |
GO:0004674 | protein serine/threonine kinase activity | 32/871 | 470/20758 | 0.005143 | 0.1237 | 0.1129 | 32 | 0.03674 |
GO:0004112 | cyclic-nucleotide phosphodiesterase activity | 5/871 | 28/20758 | 0.005655 | 0.125 | 0.1141 | 5 | 0.005741 |
GO:0005547 | phosphatidylinositol-3,4,5-trisphosphate binding | 6/871 | 40/20758 | 0.00608 | 0.125 | 0.1141 | 6 | 0.006889 |
GO:0005543 | phospholipid binding | 33/871 | 495/20758 | 0.006193 | 0.125 | 0.1141 | 33 | 0.03789 |
GO:0004435 | phosphatidylinositol phospholipase C activity | 5/871 | 29/20758 | 0.006601 | 0.125 | 0.1141 | 5 | 0.005741 |
GO:0008187 | poly-pyrimidine tract binding | 5/871 | 29/20758 | 0.006601 | 0.125 | 0.1141 | 5 | 0.005741 |
GO:0045499 | chemorepellent activity | 5/871 | 29/20758 | 0.006601 | 0.125 | 0.1141 | 5 | 0.005741 |
GO:0140326 | ATPase-coupled intramembrane lipid transporter activity | 5/871 | 29/20758 | 0.006601 | 0.125 | 0.1141 | 5 | 0.005741 |
GO:0015103 | inorganic anion transmembrane transporter activity | 15/871 | 174/20758 | 0.006674 | 0.125 | 0.1141 | 15 | 0.01722 |
GO:0005548 | phospholipid transporter activity | 8/871 | 67/20758 | 0.006803 | 0.125 | 0.1141 | 8 | 0.009185 |
GO:0008509 | anion transmembrane transporter activity | 24/871 | 331/20758 | 0.006822 | 0.125 | 0.1141 | 24 | 0.02755 |
GO:0015085 | calcium ion transmembrane transporter activity | 13/871 | 142/20758 | 0.006842 | 0.125 | 0.1141 | 13 | 0.01493 |
GO:0004791 | thioredoxin-disulfide reductase activity | 3/871 | 10/20758 | 0.007079 | 0.125 | 0.1141 | 3 | 0.003444 |
GO:0004890 | GABA-A receptor activity | 4/871 | 19/20758 | 0.007206 | 0.125 | 0.1141 | 4 | 0.004592 |
GO:0031267 | small GTPase binding | 22/871 | 297/20758 | 0.007347 | 0.125 | 0.1141 | 22 | 0.02526 |
GO:0004725 | protein tyrosine phosphatase activity | 11/871 | 112/20758 | 0.007423 | 0.125 | 0.1141 | 11 | 0.01263 |
GO:0005261 | cation channel activity | 25/871 | 360/20758 | 0.009846 | 0.1574 | 0.1437 | 25 | 0.0287 |
GO:0098960 | postsynaptic neurotransmitter receptor activity | 9/871 | 86/20758 | 0.009932 | 0.1574 | 0.1437 | 9 | 0.01033 |
GO:0004629 | phospholipase C activity | 5/871 | 32/20758 | 0.0101 | 0.1574 | 0.1437 | 5 | 0.005741 |
GO:0070566 | adenylyltransferase activity | 5/871 | 32/20758 | 0.0101 | 0.1574 | 0.1437 | 5 | 0.005741 |
GO:0005451 | monovalent cation:proton antiporter activity | 5/871 | 33/20758 | 0.0115 | 0.1645 | 0.1502 | 5 | 0.005741 |
GO:0015299 | solute:proton antiporter activity | 5/871 | 33/20758 | 0.0115 | 0.1645 | 0.1502 | 5 | 0.005741 |
GO:0051020 | GTPase binding | 23/871 | 329/20758 | 0.01201 | 0.1645 | 0.1502 | 23 | 0.02641 |
GO:0005245 | voltage-gated calcium channel activity | 6/871 | 46/20758 | 0.01201 | 0.1645 | 0.1502 | 6 | 0.006889 |
GO:0001851 | complement component C3b binding | 3/871 | 12/20758 | 0.01219 | 0.1645 | 0.1502 | 3 | 0.003444 |
GO:0004090 | carbonyl reductase (NADPH) activity | 3/871 | 12/20758 | 0.01219 | 0.1645 | 0.1502 | 3 | 0.003444 |
GO:0005229 | intracellular calcium activated chloride channel activity | 4/871 | 22/20758 | 0.01231 | 0.1645 | 0.1502 | 4 | 0.004592 |
GO:0031681 | G-protein beta-subunit binding | 4/871 | 22/20758 | 0.01231 | 0.1645 | 0.1502 | 4 | 0.004592 |
GO:0061778 | intracellular chloride channel activity | 4/871 | 22/20758 | 0.01231 | 0.1645 | 0.1502 | 4 | 0.004592 |
GO:0017124 | SH3 domain binding | 12/871 | 139/20758 | 0.01418 | 0.1865 | 0.1702 | 12 | 0.01378 |
GO:0022843 | voltage-gated cation channel activity | 13/871 | 156/20758 | 0.01441 | 0.1867 | 0.1704 | 13 | 0.01493 |
GO:1904315 | transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential | 7/871 | 62/20758 | 0.01481 | 0.1889 | 0.1724 | 7 | 0.008037 |
GO:0022851 | GABA-gated chloride ion channel activity | 3/871 | 13/20758 | 0.01536 | 0.1902 | 0.1736 | 3 | 0.003444 |
GO:0047134 | protein-disulfide reductase (NAD(P)) activity | 3/871 | 13/20758 | 0.01536 | 0.1902 | 0.1736 | 3 | 0.003444 |
GO:0043178 | alcohol binding | 9/871 | 93/20758 | 0.01607 | 0.1961 | 0.179 | 9 | 0.01033 |
GO:0030215 | semaphorin receptor binding | 4/871 | 24/20758 | 0.01674 | 0.2014 | 0.1838 | 4 | 0.004592 |
GO:0098631 | cell adhesion mediator activity | 7/871 | 64/20758 | 0.01742 | 0.2066 | 0.1885 | 7 | 0.008037 |
GO:0005244 | voltage-gated ion channel activity | 16/871 | 213/20758 | 0.01796 | 0.2072 | 0.1891 | 16 | 0.01837 |
GO:0022832 | voltage-gated channel activity | 16/871 | 213/20758 | 0.01796 | 0.2072 | 0.1891 | 16 | 0.01837 |
GO:0005161 | platelet-derived growth factor receptor binding | 3/871 | 14/20758 | 0.01895 | 0.2127 | 0.1941 | 3 | 0.003444 |
GO:0031404 | chloride ion binding | 3/871 | 14/20758 | 0.01895 | 0.2127 | 0.1941 | 3 | 0.003444 |
GO:0106310 | protein serine kinase activity | 25/871 | 383/20758 | 0.01988 | 0.2202 | 0.201 | 25 | 0.0287 |
GO:0032395 | MHC class II receptor activity | 7/871 | 67/20758 | 0.02191 | 0.2358 | 0.2152 | 7 | 0.008037 |
GO:0016779 | nucleotidyltransferase activity | 11/871 | 131/20758 | 0.0221 | 0.2358 | 0.2152 | 11 | 0.01263 |
GO:0015079 | potassium ion transmembrane transporter activity | 13/871 | 166/20758 | 0.02291 | 0.2358 | 0.2152 | 13 | 0.01493 |
GO:0016668 | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor | 3/871 | 15/20758 | 0.02296 | 0.2358 | 0.2152 | 3 | 0.003444 |
GO:0031005 | filamin binding | 3/871 | 15/20758 | 0.02296 | 0.2358 | 0.2152 | 3 | 0.003444 |
GO:0034236 | protein kinase A catalytic subunit binding | 3/871 | 15/20758 | 0.02296 | 0.2358 | 0.2152 | 3 | 0.003444 |
GO:0098632 | cell-cell adhesion mediator activity | 6/871 | 54/20758 | 0.02502 | 0.2423 | 0.2211 | 6 | 0.006889 |
GO:0030507 | spectrin binding | 4/871 | 27/20758 | 0.02505 | 0.2423 | 0.2211 | 4 | 0.004592 |
GO:0000287 | magnesium ion binding | 17/871 | 240/20758 | 0.02506 | 0.2423 | 0.2211 | 17 | 0.01952 |
GO:0022824 | transmitter-gated ion channel activity | 7/871 | 69/20758 | 0.02532 | 0.2423 | 0.2211 | 7 | 0.008037 |
GO:0022835 | transmitter-gated channel activity | 7/871 | 69/20758 | 0.02532 | 0.2423 | 0.2211 | 7 | 0.008037 |
GO:0097110 | scaffold protein binding | 7/871 | 69/20758 | 0.02532 | 0.2423 | 0.2211 | 7 | 0.008037 |
GO:0015386 | potassium:proton antiporter activity | 3/871 | 16/20758 | 0.0274 | 0.2563 | 0.2339 | 3 | 0.003444 |
GO:0140328 | floppase activity | 3/871 | 16/20758 | 0.0274 | 0.2563 | 0.2339 | 3 | 0.003444 |
GO:0015108 | chloride transmembrane transporter activity | 10/871 | 119/20758 | 0.02815 | 0.2584 | 0.2358 | 10 | 0.01148 |
GO:0016917 | GABA receptor activity | 4/871 | 28/20758 | 0.02828 | 0.2584 | 0.2358 | 4 | 0.004592 |
GO:0016791 | phosphatase activity | 20/871 | 300/20758 | 0.02854 | 0.2584 | 0.2358 | 20 | 0.02296 |
GO:0099529 | neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential | 7/871 | 71/20758 | 0.02908 | 0.2601 | 0.2373 | 7 | 0.008037 |
GO:0005544 | calcium-dependent phospholipid binding | 6/871 | 56/20758 | 0.02934 | 0.2601 | 0.2373 | 6 | 0.006889 |
GO:0019199 | transmembrane receptor protein kinase activity | 8/871 | 88/20758 | 0.03135 | 0.275 | 0.2509 | 8 | 0.009185 |
GO:0046875 | ephrin receptor binding | 4/871 | 29/20758 | 0.03175 | 0.2756 | 0.2515 | 4 | 0.004592 |
GO:0015385 | sodium:proton antiporter activity | 3/871 | 17/20758 | 0.03226 | 0.2771 | 0.2529 | 3 | 0.003444 |
GO:0004721 | phosphoprotein phosphatase activity | 14/871 | 194/20758 | 0.03451 | 0.2935 | 0.2679 | 14 | 0.01607 |
GO:0070717 | poly-purine tract binding | 4/871 | 30/20758 | 0.03546 | 0.2986 | 0.2725 | 4 | 0.004592 |
These plots show connections among categories:
Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.
Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.
Barplot for enriched categories. Values on top have lower p values.
The category with lowest p value is natural killer cell inhibitory signaling pathway (9.923283e-42), and the highest (among the lowest 10) is negative regulation of defense response to virus (0.003825161). The ratio is 3.854733e+38, i.e., they differ in 19 orders of magnitude.
ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | Count | GeneRatioCalc |
|---|---|---|---|---|---|---|---|---|
GO:0002769 | natural killer cell inhibitory signaling pathway | 34/864 | 36/21069 | 2.132e-45 | 9.923e-42 | 9.624e-42 | 34 | 0.03935 |
GO:0002767 | immune response-inhibiting cell surface receptor signaling pathway | 34/864 | 61/21069 | 2.011e-31 | 4.68e-28 | 4.539e-28 | 34 | 0.03935 |
GO:0002765 | immune response-inhibiting signal transduction | 34/864 | 63/21069 | 8.946e-31 | 1.388e-27 | 1.346e-27 | 34 | 0.03935 |
GO:0002768 | immune response-regulating cell surface receptor signaling pathway | 63/864 | 470/21069 | 9.704e-17 | 1.129e-13 | 1.095e-13 | 63 | 0.07292 |
GO:0050689 | negative regulation of defense response to virus by host | 8/864 | 10/21069 | 3.241e-10 | 3.017e-07 | 2.926e-07 | 8 | 0.009259 |
GO:0051056 | regulation of small GTPase mediated signal transduction | 41/864 | 343/21069 | 8.768e-10 | 6.801e-07 | 6.596e-07 | 41 | 0.04745 |
GO:0010804 | negative regulation of tumor necrosis factor-mediated signaling pathway | 11/864 | 41/21069 | 5.288e-07 | 0.0003516 | 0.000341 | 11 | 0.01273 |
GO:0010975 | regulation of neuron projection development | 43/864 | 468/21069 | 7.499e-07 | 0.0004363 | 0.0004231 | 43 | 0.04977 |
GO:0007158 | neuron cell-cell adhesion | 7/864 | 17/21069 | 2.581e-06 | 0.001335 | 0.001294 | 7 | 0.008102 |
GO:0050687 | negative regulation of defense response to virus | 9/864 | 35/21069 | 8.489e-06 | 0.003825 | 0.00371 | 9 | 0.01042 |
GO:0032088 | negative regulation of NF-kappaB transcription factor activity | 17/864 | 121/21069 | 9.041e-06 | 0.003825 | 0.00371 | 17 | 0.01968 |
GO:0019835 | cytolysis | 9/864 | 37/21069 | 1.389e-05 | 0.005389 | 0.005226 | 9 | 0.01042 |
GO:0050885 | neuromuscular process controlling balance | 10/864 | 54/21069 | 5.927e-05 | 0.02122 | 0.02058 | 10 | 0.01157 |
GO:0007605 | sensory perception of sound | 19/864 | 169/21069 | 6.784e-05 | 0.02191 | 0.02125 | 19 | 0.02199 |
GO:0097105 | presynaptic membrane assembly | 5/864 | 12/21069 | 7.136e-05 | 0.02191 | 0.02125 | 5 | 0.005787 |
GO:0010803 | regulation of tumor necrosis factor-mediated signaling pathway | 12/864 | 78/21069 | 7.533e-05 | 0.02191 | 0.02125 | 12 | 0.01389 |
GO:0097090 | presynaptic membrane organization | 5/864 | 13/21069 | 0.000112 | 0.02955 | 0.02866 | 5 | 0.005787 |
GO:0034329 | cell junction assembly | 37/864 | 468/21069 | 0.0001143 | 0.02955 | 0.02866 | 37 | 0.04282 |
GO:0050919 | negative chemotaxis | 9/864 | 49/21069 | 0.0001477 | 0.03617 | 0.03508 | 9 | 0.01042 |
GO:0050954 | sensory perception of mechanical stimulus | 20/864 | 197/21069 | 0.000182 | 0.04235 | 0.04108 | 20 | 0.02315 |
GO:0031589 | cell-substrate adhesion | 33/864 | 411/21069 | 0.0001981 | 0.0439 | 0.04258 | 33 | 0.03819 |
GO:0046629 | gamma-delta T cell activation | 8/864 | 41/21069 | 0.0002219 | 0.04695 | 0.04553 | 8 | 0.009259 |
GO:0050691 | regulation of defense response to virus by host | 9/864 | 55/21069 | 0.0003669 | 0.07424 | 0.072 | 9 | 0.01042 |
GO:0031346 | positive regulation of cell projection organization | 30/864 | 375/21069 | 0.0004032 | 0.07819 | 0.07583 | 30 | 0.03472 |
GO:0072523 | purine-containing compound catabolic process | 9/864 | 56/21069 | 0.0004215 | 0.07846 | 0.07609 | 9 | 0.01042 |
GO:1900122 | positive regulation of receptor binding | 4/864 | 10/21069 | 0.0004837 | 0.08343 | 0.08091 | 4 | 0.00463 |
GO:0051932 | synaptic transmission, GABAergic | 10/864 | 69/21069 | 0.000484 | 0.08343 | 0.08091 | 10 | 0.01157 |
GO:0071709 | membrane assembly | 10/864 | 71/21069 | 0.0006106 | 0.1015 | 0.09843 | 10 | 0.01157 |
GO:0009582 | detection of abiotic stimulus | 16/864 | 156/21069 | 0.0006952 | 0.1116 | 0.1082 | 16 | 0.01852 |
GO:0006198 | cAMP catabolic process | 4/864 | 11/21069 | 0.0007355 | 0.1141 | 0.1107 | 4 | 0.00463 |
GO:0001895 | retina homeostasis | 11/864 | 87/21069 | 0.0008432 | 0.1206 | 0.1169 | 11 | 0.01273 |
GO:0007269 | neurotransmitter secretion | 16/864 | 159/21069 | 0.0008549 | 0.1206 | 0.1169 | 16 | 0.01852 |
GO:0099643 | signal release from synapse | 16/864 | 159/21069 | 0.0008549 | 0.1206 | 0.1169 | 16 | 0.01852 |
GO:0001580 | detection of chemical stimulus involved in sensory perception of bitter taste | 9/864 | 62/21069 | 0.0009068 | 0.1216 | 0.118 | 9 | 0.01042 |
GO:0007160 | cell-matrix adhesion | 23/864 | 273/21069 | 0.0009212 | 0.1216 | 0.118 | 23 | 0.02662 |
GO:0044091 | membrane biogenesis | 10/864 | 75/21069 | 0.0009463 | 0.1216 | 0.118 | 10 | 0.01157 |
GO:0007626 | locomotory behavior | 19/864 | 208/21069 | 0.0009669 | 0.1216 | 0.118 | 19 | 0.02199 |
GO:0009261 | ribonucleotide catabolic process | 8/864 | 51/21069 | 0.001031 | 0.1262 | 0.1224 | 8 | 0.009259 |
GO:0032228 | regulation of synaptic transmission, GABAergic | 7/864 | 40/21069 | 0.001086 | 0.1296 | 0.1257 | 7 | 0.008102 |
GO:0007034 | vacuolar transport | 17/864 | 180/21069 | 0.001217 | 0.1402 | 0.136 | 17 | 0.01968 |
GO:0001960 | negative regulation of cytokine-mediated signaling pathway | 12/864 | 105/21069 | 0.001235 | 0.1402 | 0.136 | 12 | 0.01389 |
GO:0030032 | lamellipodium assembly | 10/864 | 78/21069 | 0.001287 | 0.1426 | 0.1383 | 10 | 0.01157 |
GO:0099054 | presynapse assembly | 8/864 | 53/21069 | 0.001335 | 0.1445 | 0.1401 | 8 | 0.009259 |
GO:0048013 | ephrin receptor signaling pathway | 8/864 | 54/21069 | 0.001512 | 0.1585 | 0.1538 | 8 | 0.009259 |
GO:0050770 | regulation of axonogenesis | 16/864 | 168/21069 | 0.001533 | 0.1585 | 0.1538 | 16 | 0.01852 |
GO:0009266 | response to temperature stimulus | 19/864 | 217/21069 | 0.001591 | 0.1609 | 0.156 | 19 | 0.02199 |
GO:0015698 | inorganic anion transport | 18/864 | 201/21069 | 0.001624 | 0.1609 | 0.156 | 18 | 0.02083 |
GO:0046578 | regulation of Ras protein signal transduction | 19/864 | 218/21069 | 0.001678 | 0.1612 | 0.1563 | 19 | 0.02199 |
GO:1902547 | regulation of cellular response to vascular endothelial growth factor stimulus | 6/864 | 32/21069 | 0.001697 | 0.1612 | 0.1563 | 6 | 0.006944 |
GO:0050912 | detection of chemical stimulus involved in sensory perception of taste | 9/864 | 68/21069 | 0.001771 | 0.1616 | 0.1567 | 9 | 0.01042 |
GO:0050913 | sensory perception of bitter taste | 9/864 | 68/21069 | 0.001771 | 0.1616 | 0.1567 | 9 | 0.01042 |
GO:0060761 | negative regulation of response to cytokine stimulus | 12/864 | 110/21069 | 0.001849 | 0.1655 | 0.1605 | 12 | 0.01389 |
GO:0099172 | presynapse organization | 8/864 | 56/21069 | 0.001921 | 0.1687 | 0.1636 | 8 | 0.009259 |
GO:1905515 | non-motile cilium assembly | 9/864 | 69/21069 | 0.001964 | 0.1693 | 0.1642 | 9 | 0.01042 |
GO:0050905 | neuromuscular process | 16/864 | 173/21069 | 0.002074 | 0.1735 | 0.1682 | 16 | 0.01852 |
GO:0010810 | regulation of cell-substrate adhesion | 20/864 | 239/21069 | 0.002087 | 0.1735 | 0.1682 | 20 | 0.02315 |
GO:0009154 | purine ribonucleotide catabolic process | 7/864 | 45/21069 | 0.002214 | 0.1803 | 0.1749 | 7 | 0.008102 |
GO:0032731 | positive regulation of interleukin-1 beta production | 11/864 | 98/21069 | 0.002247 | 0.1803 | 0.1749 | 11 | 0.01273 |
GO:0007041 | lysosomal transport | 14/864 | 144/21069 | 0.002428 | 0.1909 | 0.1851 | 14 | 0.0162 |
GO:0061640 | cytoskeleton-dependent cytokinesis | 12/864 | 114/21069 | 0.002504 | 0.1909 | 0.1851 | 12 | 0.01389 |
GO:0045494 | photoreceptor cell maintenance | 7/864 | 46/21069 | 0.002521 | 0.1909 | 0.1851 | 7 | 0.008102 |
GO:0060117 | auditory receptor cell development | 5/864 | 24/21069 | 0.002543 | 0.1909 | 0.1851 | 5 | 0.005787 |
GO:0009214 | cyclic nucleotide catabolic process | 4/864 | 15/21069 | 0.002668 | 0.1913 | 0.1856 | 4 | 0.00463 |
GO:0097120 | receptor localization to synapse | 8/864 | 59/21069 | 0.002693 | 0.1913 | 0.1856 | 8 | 0.009259 |
GO:0007416 | synapse assembly | 17/864 | 194/21069 | 0.002712 | 0.1913 | 0.1856 | 17 | 0.01968 |
GO:0007214 | gamma-aminobutyric acid signaling pathway | 6/864 | 35/21069 | 0.002739 | 0.1913 | 0.1856 | 6 | 0.006944 |
GO:0016358 | dendrite development | 21/864 | 262/21069 | 0.002755 | 0.1913 | 0.1856 | 21 | 0.02431 |
GO:0060119 | inner ear receptor cell development | 7/864 | 47/21069 | 0.002859 | 0.1957 | 0.1898 | 7 | 0.008102 |
GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 14/864 | 147/21069 | 0.002937 | 0.1981 | 0.1921 | 14 | 0.0162 |
GO:0120032 | regulation of plasma membrane bounded cell projection assembly | 18/864 | 213/21069 | 0.003063 | 0.1987 | 0.1927 | 18 | 0.02083 |
GO:0003148 | outflow tract septum morphogenesis | 5/864 | 25/21069 | 0.003072 | 0.1987 | 0.1927 | 5 | 0.005787 |
GO:0006836 | neurotransmitter transport | 19/864 | 230/21069 | 0.003074 | 0.1987 | 0.1927 | 19 | 0.02199 |
GO:0048841 | regulation of axon extension involved in axon guidance | 6/864 | 36/21069 | 0.003175 | 0.2024 | 0.1963 | 6 | 0.006944 |
GO:0060491 | regulation of cell projection assembly | 18/864 | 215/21069 | 0.003383 | 0.2102 | 0.2038 | 18 | 0.02083 |
GO:0097091 | synaptic vesicle clustering | 4/864 | 16/21069 | 0.003443 | 0.2102 | 0.2038 | 4 | 0.00463 |
GO:0007409 | axonogenesis | 32/864 | 468/21069 | 0.003454 | 0.2102 | 0.2038 | 32 | 0.03704 |
GO:0050688 | regulation of defense response to virus | 10/864 | 89/21069 | 0.003477 | 0.2102 | 0.2038 | 10 | 0.01157 |
GO:0048813 | dendrite morphogenesis | 14/864 | 150/21069 | 0.00353 | 0.2106 | 0.2043 | 14 | 0.0162 |
GO:0046058 | cAMP metabolic process | 5/864 | 26/21069 | 0.003677 | 0.2161 | 0.2095 | 5 | 0.005787 |
GO:1901888 | regulation of cell junction assembly | 19/864 | 234/21069 | 0.003714 | 0.2161 | 0.2095 | 19 | 0.02199 |
GO:0010634 | positive regulation of epithelial cell migration | 16/864 | 184/21069 | 0.003841 | 0.2207 | 0.214 | 16 | 0.01852 |
GO:0098659 | inorganic cation import across plasma membrane | 13/864 | 136/21069 | 0.003949 | 0.2214 | 0.2147 | 13 | 0.01505 |
GO:0099587 | inorganic ion import across plasma membrane | 13/864 | 136/21069 | 0.003949 | 0.2214 | 0.2147 | 13 | 0.01505 |
GO:0006195 | purine nucleotide catabolic process | 7/864 | 50/21069 | 0.004084 | 0.2263 | 0.2195 | 7 | 0.008102 |
GO:0051057 | positive regulation of small GTPase mediated signal transduction | 9/864 | 77/21069 | 0.004185 | 0.2282 | 0.2213 | 9 | 0.01042 |
GO:0009581 | detection of external stimulus | 14/864 | 153/21069 | 0.004217 | 0.2282 | 0.2213 | 14 | 0.0162 |
GO:0043433 | negative regulation of DNA-binding transcription factor activity | 18/864 | 220/21069 | 0.004308 | 0.2305 | 0.2235 | 18 | 0.02083 |
GO:0042278 | purine nucleoside metabolic process | 5/864 | 27/21069 | 0.004363 | 0.2307 | 0.2238 | 5 | 0.005787 |
GO:0009166 | nucleotide catabolic process | 9/864 | 78/21069 | 0.004563 | 0.2386 | 0.2314 | 9 | 0.01042 |
GO:0001952 | regulation of cell-matrix adhesion | 13/864 | 139/21069 | 0.004753 | 0.2431 | 0.2358 | 13 | 0.01505 |
GO:0030048 | actin filament-based movement | 13/864 | 139/21069 | 0.004753 | 0.2431 | 0.2358 | 13 | 0.01505 |
GO:0090303 | positive regulation of wound healing | 8/864 | 65/21069 | 0.004945 | 0.2439 | 0.2365 | 8 | 0.009259 |
GO:0030705 | cytoskeleton-dependent intracellular transport | 18/864 | 223/21069 | 0.004957 | 0.2439 | 0.2365 | 18 | 0.02083 |
GO:0086003 | cardiac muscle cell contraction | 9/864 | 79/21069 | 0.004967 | 0.2439 | 0.2365 | 9 | 0.01042 |
GO:0031503 | protein-containing complex localization | 16/864 | 189/21069 | 0.004978 | 0.2439 | 0.2365 | 16 | 0.01852 |
GO:0002253 | activation of immune response | 33/864 | 500/21069 | 0.005143 | 0.2493 | 0.2418 | 33 | 0.03819 |
GO:0050910 | detection of mechanical stimulus involved in sensory perception of sound | 4/864 | 18/21069 | 0.005424 | 0.256 | 0.2483 | 4 | 0.00463 |
GO:0048846 | axon extension involved in axon guidance | 6/864 | 40/21069 | 0.005447 | 0.256 | 0.2483 | 6 | 0.006944 |
GO:1902284 | neuron projection extension involved in neuron projection guidance | 6/864 | 40/21069 | 0.005447 | 0.256 | 0.2483 | 6 | 0.006944 |
GO:0002429 | immune response-activating cell surface receptor signaling pathway | 27/864 | 390/21069 | 0.005846 | 0.2694 | 0.2613 | 27 | 0.03125 |
These plots show connections among categories:
Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.
Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.
Barplot for enriched categories. Values on top have lower p values.
The category with lowest p value is glutamatergic synapse (0.0009468179), and the highest (among the lowest 10) is filopodium (0.01251404). The ratio is 13.21694, i.e., they differ in 1 orders of magnitude.
ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | Count | GeneRatioCalc |
|---|---|---|---|---|---|---|---|---|
GO:0098978 | glutamatergic synapse | 34/906 | 354/22283 | 3.462e-06 | 0.0009468 | 0.0008154 | 34 | 0.03753 |
GO:0097060 | synaptic membrane | 37/906 | 408/22283 | 4.974e-06 | 0.0009468 | 0.0008154 | 37 | 0.04084 |
GO:0098858 | actin-based cell projection | 27/906 | 253/22283 | 5.063e-06 | 0.0009468 | 0.0008154 | 27 | 0.0298 |
GO:0045211 | postsynaptic membrane | 29/906 | 296/22283 | 1.22e-05 | 0.001711 | 0.001474 | 29 | 0.03201 |
GO:0005938 | cell cortex | 30/906 | 326/22283 | 2.903e-05 | 0.003257 | 0.002805 | 30 | 0.03311 |
GO:1990351 | transporter complex | 36/906 | 447/22283 | 8.301e-05 | 0.007396 | 0.00637 | 36 | 0.03974 |
GO:0042383 | sarcolemma | 17/906 | 147/22283 | 0.000103 | 0.007396 | 0.00637 | 17 | 0.01876 |
GO:0016010 | dystrophin-associated glycoprotein complex | 6/906 | 20/22283 | 0.0001055 | 0.007396 | 0.00637 | 6 | 0.006623 |
GO:1990531 | phospholipid-translocating ATPase complex | 5/906 | 14/22283 | 0.0001619 | 0.01009 | 0.00869 | 5 | 0.005519 |
GO:0030175 | filopodium | 15/906 | 128/22283 | 0.0002231 | 0.01251 | 0.01078 | 15 | 0.01656 |
GO:0034702 | ion channel complex | 27/906 | 323/22283 | 0.0003452 | 0.01747 | 0.01505 | 27 | 0.0298 |
GO:0099060 | integral component of postsynaptic specialization membrane | 11/906 | 80/22283 | 0.0003811 | 0.01747 | 0.01505 | 11 | 0.01214 |
GO:0090665 | glycoprotein complex | 6/906 | 25/22283 | 0.0004049 | 0.01747 | 0.01505 | 6 | 0.006623 |
GO:0032588 | trans-Golgi network membrane | 17/906 | 166/22283 | 0.0004447 | 0.01782 | 0.01535 | 17 | 0.01876 |
GO:0098984 | neuron to neuron synapse | 30/906 | 383/22283 | 0.0005008 | 0.01818 | 0.01565 | 30 | 0.03311 |
GO:0098948 | intrinsic component of postsynaptic specialization membrane | 11/906 | 83/22283 | 0.0005258 | 0.01818 | 0.01565 | 11 | 0.01214 |
GO:0005802 | trans-Golgi network | 27/906 | 333/22283 | 0.0005546 | 0.01818 | 0.01565 | 27 | 0.0298 |
GO:0098685 | Schaffer collateral - CA1 synapse | 11/906 | 84/22283 | 0.0005832 | 0.01818 | 0.01565 | 11 | 0.01214 |
GO:0005891 | voltage-gated calcium channel complex | 8/906 | 49/22283 | 0.0007427 | 0.02193 | 0.01889 | 8 | 0.00883 |
GO:0099023 | vesicle tethering complex | 10/906 | 74/22283 | 0.0007981 | 0.02239 | 0.01928 | 10 | 0.01104 |
GO:0098982 | GABA-ergic synapse | 11/906 | 88/22283 | 0.0008676 | 0.02318 | 0.01996 | 11 | 0.01214 |
GO:0099240 | intrinsic component of synaptic membrane | 17/906 | 179/22283 | 0.001046 | 0.02668 | 0.02298 | 17 | 0.01876 |
GO:1902495 | transmembrane transporter complex | 31/906 | 421/22283 | 0.001128 | 0.02752 | 0.0237 | 31 | 0.03422 |
GO:0099061 | integral component of postsynaptic density membrane | 8/906 | 53/22283 | 0.001265 | 0.02958 | 0.02547 | 8 | 0.00883 |
GO:0032421 | stereocilium bundle | 9/906 | 66/22283 | 0.00135 | 0.03029 | 0.02609 | 9 | 0.009934 |
GO:0099699 | integral component of synaptic membrane | 16/906 | 168/22283 | 0.001408 | 0.03039 | 0.02617 | 16 | 0.01766 |
GO:0032279 | asymmetric synapse | 27/906 | 357/22283 | 0.00156 | 0.03242 | 0.02792 | 27 | 0.0298 |
GO:0099146 | intrinsic component of postsynaptic density membrane | 8/906 | 56/22283 | 0.001822 | 0.03651 | 0.03144 | 8 | 0.00883 |
GO:0032420 | stereocilium | 8/906 | 57/22283 | 0.002046 | 0.03957 | 0.03408 | 8 | 0.00883 |
GO:0031252 | cell leading edge | 32/906 | 457/22283 | 0.00212 | 0.03965 | 0.03415 | 32 | 0.03532 |
GO:0001917 | photoreceptor inner segment | 9/906 | 72/22283 | 0.002501 | 0.04335 | 0.03733 | 9 | 0.009934 |
GO:0014069 | postsynaptic density | 26/906 | 351/22283 | 0.00251 | 0.04335 | 0.03733 | 26 | 0.0287 |
GO:0097730 | non-motile cilium | 16/906 | 178/22283 | 0.00255 | 0.04335 | 0.03733 | 16 | 0.01766 |
GO:0031256 | leading edge membrane | 17/906 | 196/22283 | 0.002772 | 0.04571 | 0.03937 | 17 | 0.01876 |
GO:0019897 | extrinsic component of plasma membrane | 16/906 | 180/22283 | 0.002852 | 0.04571 | 0.03937 | 16 | 0.01766 |
GO:0099572 | postsynaptic specialization | 27/906 | 374/22283 | 0.002999 | 0.04674 | 0.04025 | 27 | 0.0298 |
GO:0034703 | cation channel complex | 19/906 | 236/22283 | 0.003728 | 0.05642 | 0.04859 | 19 | 0.02097 |
GO:0016323 | basolateral plasma membrane | 20/906 | 254/22283 | 0.003822 | 0.05642 | 0.04859 | 20 | 0.02208 |
GO:0089717 | spanning component of membrane | 5/906 | 27/22283 | 0.004209 | 0.05912 | 0.05091 | 5 | 0.005519 |
GO:0001674 | female germ cell nucleus | 4/906 | 17/22283 | 0.004228 | 0.05912 | 0.05091 | 4 | 0.004415 |
GO:0034704 | calcium channel complex | 9/906 | 78/22283 | 0.004321 | 0.05912 | 0.05091 | 9 | 0.009934 |
GO:0098862 | cluster of actin-based cell projections | 15/906 | 172/22283 | 0.00454 | 0.06064 | 0.05222 | 15 | 0.01656 |
GO:0031253 | cell projection membrane | 27/906 | 388/22283 | 0.004913 | 0.0641 | 0.05521 | 27 | 0.0298 |
GO:0098791 | Golgi apparatus subcompartment | 32/906 | 484/22283 | 0.005033 | 0.06417 | 0.05527 | 32 | 0.03532 |
GO:0009925 | basal plasma membrane | 21/906 | 279/22283 | 0.005184 | 0.06419 | 0.05528 | 21 | 0.02318 |
GO:0032045 | guanyl-nucleotide exchange factor complex | 4/906 | 18/22283 | 0.005263 | 0.06419 | 0.05528 | 4 | 0.004415 |
GO:0099634 | postsynaptic specialization membrane | 12/906 | 128/22283 | 0.006012 | 0.07176 | 0.0618 | 12 | 0.01325 |
GO:1902711 | GABA-A receptor complex | 4/906 | 19/22283 | 0.006455 | 0.07278 | 0.06268 | 4 | 0.004415 |
GO:0099569 | presynaptic cytoskeleton | 3/906 | 10/22283 | 0.006487 | 0.07278 | 0.06268 | 3 | 0.003311 |
GO:1905103 | integral component of lysosomal membrane | 3/906 | 10/22283 | 0.006487 | 0.07278 | 0.06268 | 3 | 0.003311 |
GO:0016328 | lateral plasma membrane | 8/906 | 69/22283 | 0.006764 | 0.07323 | 0.06307 | 8 | 0.00883 |
GO:0099055 | integral component of postsynaptic membrane | 12/906 | 130/22283 | 0.006788 | 0.07323 | 0.06307 | 12 | 0.01325 |
GO:0043073 | germ cell nucleus | 8/906 | 70/22283 | 0.007371 | 0.07788 | 0.06708 | 8 | 0.00883 |
GO:0098839 | postsynaptic density membrane | 10/906 | 100/22283 | 0.007497 | 0.07788 | 0.06708 | 10 | 0.01104 |
GO:0031594 | neuromuscular junction | 8/906 | 71/22283 | 0.00802 | 0.0818 | 0.07045 | 8 | 0.00883 |
GO:0016342 | catenin complex | 5/906 | 32/22283 | 0.008883 | 0.08899 | 0.07664 | 5 | 0.005519 |
GO:0098936 | intrinsic component of postsynaptic membrane | 12/906 | 135/22283 | 0.009075 | 0.08902 | 0.07667 | 12 | 0.01325 |
GO:0032426 | stereocilium tip | 4/906 | 21/22283 | 0.009346 | 0.08902 | 0.07667 | 4 | 0.004415 |
GO:0005770 | late endosome | 23/906 | 332/22283 | 0.00942 | 0.08902 | 0.07667 | 23 | 0.02539 |
GO:0098687 | chromosomal region | 28/906 | 428/22283 | 0.009521 | 0.08902 | 0.07667 | 28 | 0.03091 |
GO:0030863 | cortical cytoskeleton | 11/906 | 120/22283 | 0.009798 | 0.09011 | 0.07761 | 11 | 0.01214 |
GO:0016529 | sarcoplasmic reticulum | 8/906 | 74/22283 | 0.01022 | 0.09135 | 0.07867 | 8 | 0.00883 |
GO:0045178 | basal part of cell | 21/906 | 297/22283 | 0.01026 | 0.09135 | 0.07867 | 21 | 0.02318 |
GO:0016528 | sarcoplasm | 9/906 | 90/22283 | 0.0109 | 0.09233 | 0.07952 | 9 | 0.009934 |
GO:0060077 | inhibitory synapse | 4/906 | 22/22283 | 0.01106 | 0.09233 | 0.07952 | 4 | 0.004415 |
GO:0030062 | mitochondrial tricarboxylic acid cycle enzyme complex | 3/906 | 12/22283 | 0.01119 | 0.09233 | 0.07952 | 3 | 0.003311 |
GO:0031166 | integral component of vacuolar membrane | 3/906 | 12/22283 | 0.01119 | 0.09233 | 0.07952 | 3 | 0.003311 |
GO:0031310 | intrinsic component of vacuolar membrane | 3/906 | 12/22283 | 0.01119 | 0.09233 | 0.07952 | 3 | 0.003311 |
GO:0001650 | fibrillar center | 14/906 | 174/22283 | 0.0118 | 0.09554 | 0.08228 | 14 | 0.01545 |
GO:0097731 | 9+0 non-motile cilium | 12/906 | 140/22283 | 0.01192 | 0.09554 | 0.08228 | 12 | 0.01325 |
GO:0001726 | ruffle | 15/906 | 194/22283 | 0.01316 | 0.1025 | 0.08829 | 15 | 0.01656 |
GO:0031902 | late endosome membrane | 15/906 | 194/22283 | 0.01316 | 0.1025 | 0.08829 | 15 | 0.01656 |
GO:0044545 | NSL complex | 3/906 | 13/22283 | 0.01411 | 0.1085 | 0.09342 | 3 | 0.003311 |
GO:0031514 | motile cilium | 18/906 | 262/22283 | 0.02152 | 0.1632 | 0.1405 | 18 | 0.01987 |
GO:1902710 | GABA receptor complex | 4/906 | 27/22283 | 0.02262 | 0.1692 | 0.1457 | 4 | 0.004415 |
GO:0005923 | bicellular tight junction | 11/906 | 136/22283 | 0.02308 | 0.1704 | 0.1467 | 11 | 0.01214 |
GO:0043034 | costamere | 3/906 | 16/22283 | 0.02525 | 0.1815 | 0.1564 | 3 | 0.003311 |
GO:0098831 | presynaptic active zone cytoplasmic component | 3/906 | 16/22283 | 0.02525 | 0.1815 | 0.1564 | 3 | 0.003311 |
GO:0031527 | filopodium membrane | 4/906 | 28/22283 | 0.02556 | 0.1815 | 0.1564 | 4 | 0.004415 |
GO:0000781 | chromosome, telomeric region | 14/906 | 193/22283 | 0.02649 | 0.1858 | 0.16 | 14 | 0.01545 |
GO:0032587 | ruffle membrane | 9/906 | 106/22283 | 0.02877 | 0.1993 | 0.1716 | 9 | 0.009934 |
GO:0070160 | tight junction | 11/906 | 141/22283 | 0.02913 | 0.1993 | 0.1717 | 11 | 0.01214 |
GO:0045239 | tricarboxylic acid cycle enzyme complex | 3/906 | 17/22283 | 0.02975 | 0.2011 | 0.1732 | 3 | 0.003311 |
GO:0043296 | apical junction complex | 12/906 | 160/22283 | 0.03052 | 0.2019 | 0.1739 | 12 | 0.01325 |
GO:0044304 | main axon | 7/906 | 74/22283 | 0.0306 | 0.2019 | 0.1739 | 7 | 0.007726 |
GO:0005930 | axoneme | 12/906 | 161/22283 | 0.03181 | 0.2075 | 0.1787 | 12 | 0.01325 |
GO:0097014 | ciliary plasm | 12/906 | 162/22283 | 0.03314 | 0.2137 | 0.184 | 12 | 0.01325 |
GO:0019898 | extrinsic component of membrane | 21/906 | 335/22283 | 0.03368 | 0.2147 | 0.1849 | 21 | 0.02318 |
GO:0043083 | synaptic cleft | 3/906 | 18/22283 | 0.03465 | 0.2163 | 0.1863 | 3 | 0.003311 |
GO:0035097 | histone methyltransferase complex | 7/906 | 76/22283 | 0.03471 | 0.2163 | 0.1863 | 7 | 0.007726 |
GO:0030136 | clathrin-coated vesicle | 18/906 | 279/22283 | 0.03689 | 0.2255 | 0.1942 | 18 | 0.01987 |
GO:0034707 | chloride channel complex | 6/906 | 61/22283 | 0.0371 | 0.2255 | 0.1942 | 6 | 0.006623 |
GO:0034705 | potassium channel complex | 8/906 | 94/22283 | 0.03752 | 0.2255 | 0.1942 | 8 | 0.00883 |
GO:0030669 | clathrin-coated endocytic vesicle membrane | 10/906 | 129/22283 | 0.03779 | 0.2255 | 0.1942 | 10 | 0.01104 |
GO:0030027 | lamellipodium | 15/906 | 223/22283 | 0.03948 | 0.2332 | 0.2008 | 15 | 0.01656 |
GO:0044214 | spanning component of plasma membrane | 3/906 | 19/22283 | 0.03994 | 0.2334 | 0.201 | 3 | 0.003311 |
GO:0042641 | actomyosin | 7/906 | 80/22283 | 0.04399 | 0.2544 | 0.2191 | 7 | 0.007726 |
GO:0000793 | condensed chromosome | 18/906 | 286/22283 | 0.04514 | 0.2584 | 0.2225 | 18 | 0.01987 |
GO:0033276 | transcription factor TFTC complex | 3/906 | 20/22283 | 0.04561 | 0.2584 | 0.2226 | 3 | 0.003311 |
GO:0042613 | MHC class II protein complex | 8/906 | 98/22283 | 0.04618 | 0.2591 | 0.2231 | 8 | 0.00883 |
These plots show connections among categories:
Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.
Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.
Here it is a barplot of most significantly enriched DO categories.
Barplot for enriched categories. Values on top have lower p values.
The most significant category was ‘autism spectrum disorder’.
Here it is a barplot of most significantly enriched NCG categories.
Barplot for enriched categories. Values on top have lower p values.
The most significant category was clear_cell_renal_cancer.