TE analysis report

Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

• 3 647 unique TE insertions, which amount to a total of 6 528 occurrences among all samples.
• With any insertion appearing on 1.8 ± 0.41 samples (median of 2 occurrences/insertion).
• The average insertion count per case is 3 264 ± 15.6.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

• 2 534 TE insertions.
• A total of 4 752 calls across cases.
• A mean prevalence of 1.9 ± 0.33.
• The median prevalence is 2.
• Each sample carries an average of 2 376 ± 22.6 TE insertions.

1.2 Genotyping

• 237 unique insertions that passed the stringent filtering. (9.4% of the total unique insertions), had at least one occurrence genotyped as 0/0.

• These amount to 311 total count (6.5% of filter-passing occurrences).

• 179 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 253 insertion counts.

• Of these fully wrong calls, 105 were only found on a single patient each (58.7% of the 179).

• The strict criteria missed calls for 133 unique insertions (5.2%).

• These mean a total of 133 occurrences, out of 4 752 calls that passed the stringent filter.

• 133 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion	Unique INS with false positives (%)	Total false positives (%)	Unique INS (total) with all false positives	Unique INS with false negatives (%)	Total false negatives (Total positives)	Unique INS with more false negatives than positives
Strict	237 ( 9.4)	311 (6.5)	179 (253)	133 (5.2)	133 (4 752)	133
Lax	692 (19.0)	920 (14.1)	597 (825)	0 (0.0)	0 (6 528)	0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

821 TE insertions were found on all cases in homozygosis.

Click to show table with 821 rows.

Position	Length	Type	AF
chr1:1 477 853	133	SINE (AluSp)	1
chr1:1 993 703	145	SINE (FLAM_C)	1
chr1:6 715 538	39	Retroposon (SVA_D)	1
chr1:8 501 370	48	Retroposon (SVA_F)	1
chr1:9 170 366	317	SINE (AluY)	1
chr1:9 968 550	139	SINE (AluSx3)	1
chr1:13 658 369	125	Retroposon (SVA_F)	1
chr1:16 424 204	134	SINE (AluYk2)	1
chr1:17 868 629	65	DNA (MADE1)	1
chr1:21 166 095	315	SINE (AluYa5)	1
chr1:33 052 502	101	Retroposon (SVA_F)	1
chr1:37 967 098	314	SINE (AluY)	1
chr1:44 876 572	397	Retroposon (SVA_E)	1
chr1:46 242 226	47	Retroposon (SVA_F)	1
chr1:51 711 474	317	Retroposon (SVA_A)	1
chr1:52 869 959	98	Retroposon (SVA_F)	1
chr1:64 201 483	273	Retroposon (SVA_E)	1
chr1:64 492 377	342	SINE (AluY)	1
chr1:69 465 246	36	LINE (L1P3)	1
chr1:69 625 372	326	SINE (AluYa5)	1
chr1:74 989 508	40	LINE (L1P1)	1
chr1:80 703 232	65	LINE (L1P2)	1
chr1:81 846 355	322	SINE (AluYb8)	1
chr1:90 891 771	48	Retroposon (SVA_F)	1
chr1:92 701 961	323	SINE (AluYa5)	1
chr1:93 032 654	332	SINE (AluYa5)	1
chr1:97 252 071	324	SINE (AluYk3)	1
chr1:100 528 653	328	SINE (AluYb9)	1
chr1:100 819 211	509	LINE (L1M5)	1
chr1:103 272 219	96	LTR (HERVL-int)	1
chr1:104 511 448	318	SINE (AluYa5)	1
chr1:104 688 480	134	SINE (AluY)	1
chr1:108 675 986	158	Retroposon (SVA_A)	1
chr1:117 430 030	174	Retroposon (SVA_F)	1
chr1:120 402 187	29	SINE (Alu)	1
chr1:125 013 223	222	LINE (L1PA3)	1
chr1:147 949 446	117	Retroposon (SVA_F)	1
chr1:149 920 127	340	SINE (AluY)	1
chr1:151 769 291	90	Retroposon (SVA_F)	1
chr1:156 328 044	140	Retroposon (SVA_F)	1
chr1:159 449 987	90	Retroposon (SVA_C)	1
chr1:162 791 517	316	SINE (AluYa5)	1
chr1:169 391 853	42	LTR (PABL_A)	1
chr1:169 993 600	163	SINE (AluSz)	1
chr1:172 571 914	354	Retroposon (SVA_F)	1
chr1:179 522 822	352	SINE (AluYb9)	1
chr1:180 888 412	320	SINE (AluYa5)	1
chr1:188 469 075	304	SINE (AluY)	1
chr1:191 611 634	324	SINE (AluYa5)	1
chr1:194 705 994	328	SINE (AluY)	1
chr1:196 184 399	331	SINE (AluYb8)	1
chr1:196 792 226	323	SINE (AluYb8)	1
chr1:196 810 057	129	SINE (AluYa5)	1
chr1:203 919 175	225	Retroposon (SVA_F)	1
chr1:214 869 357	95	Retroposon (SVA_F)	1
chr1:220 466 556	97	Retroposon (SVA_F)	1
chr1:222 697 340	328	SINE (AluYb8)	1
chr1:228 824 170	324	SINE (AluYk2)	1
chr1:235 635 569	167	LTR (MSTB)	1
chr1:239 971 543	326	SINE (AluYa5)	1
chr1:241 326 641	326	SINE (AluYb8)	1
chr1:245 826 009	324	SINE (AluSx3)	1
chr1:248 911 737	126	Retroposon (SVA_F)	1
chr2:1 199 165	306	SINE (AluY)	1
chr2:1 467 941	329	SINE (AluY)	1
chr2:2 295 538	173	LTR (HERVIP10FH-int)	1
chr2:3 591 088	128	Retroposon (SVA_F)	1
chr2:9 748 659	324	SINE (AluYb8)	1
chr2:11 286 233	324	SINE (AluY)	1
chr2:15 379 414	312	SINE (AluY)	1
chr2:15 541 819	152	Retroposon (SVA_F)	1
chr2:21 573 937	297	SINE (AluYd8)	1
chr2:27 539 883	126	Retroposon (SVA_F)	1
chr2:31 336 815	310	SINE (AluYa5)	1
chr2:31 727 126	318	SINE (AluYa5)	1
chr2:43 063 211	39	Retroposon (SVA_F)	1
chr2:44 598 695	316	SINE (AluYa5)	1
chr2:46 701 810	298	SINE (AluYa5)	1
chr2:48 555 313	47	Retroposon (SVA_F)	1
chr2:50 375 490	328	SINE (AluYb8)	1
chr2:54 446 445	320	SINE (AluY)	1
chr2:63 552 086	325	SINE (AluYb8)	1
chr2:64 872 901	329	SINE (AluYb8)	1
chr2:65 106 650	304	SINE (AluYc)	1
chr2:66 431 844	325	SINE (AluYe5)	1
chr2:75 160 770	314	SINE (AluY)	1
chr2:76 030 574	233	SINE (AluYb8)	1
chr2:80 541 884	269	SINE (AluYa5)	1
chr2:84 501 628	312	SINE (AluYg6)	1
chr2:84 608 279	36	DNA (Tigger1)	1
chr2:85 488 315	77	Retroposon (SVA_F)	1
chr2:87 180 576	493	LINE (L1HS)	1
chr2:105 836 109	316	SINE (AluYf1)	1
chr2:105 969 153	321	SINE (AluYa5)	1
chr2:111 283 808	329	SINE (AluYa5)	1
chr2:113 395 042	127	Retroposon (SVA_F)	1
chr2:127 981 347	120	LTR (LTR21B)	1
chr2:137 419 374	101	SINE (AluY)	1
chr2:137 419 414	60	SINE (AluYb8)	1
chr2:151 875 949	48	Retroposon (SVA_F)	1
chr2:152 391 750	328	SINE (AluYg6)	1
chr2:153 896 067	331	SINE (AluYa5)	1
chr2:161 095 804	300	SINE (AluSx)	1
chr2:171 866 581	402	Retroposon (SVA_A)	1
chr2:174 871 203	318	SINE (AluYa5)	1
chr2:177 453 984	333	SINE (AluYb8)	1
chr2:177 486 724	340	SINE (AluY)	1
chr2:188 711 105	90	LTR (MER11B)	1
chr2:190 430 797	94	Retroposon (SVA_F)	1
chr2:191 975 312	330	SINE (AluYb8)	1
chr2:192 131 143	119	LTR (HERVH-int)	1
chr2:197 898 723	311	SINE (AluY)	1
chr2:202 534 992	49	Retroposon (SVA_F)	1
chr2:214 336 906	323	SINE (AluYb8)	1
chr2:215 683 694	326	SINE (AluYb8)	1
chr2:217 316 033	304	SINE (AluYb8)	1
chr2:221 579 730	36	SINE (AluSg4)	1
chr2:229 743 530	96	Retroposon (SVA_F)	1
chr2:231 558 287	318	SINE (AluYk2)	1
chr2:232 905 863	48	Retroposon (SVA_F)	1
chr3:4 163 465	314	SINE (AluYa5)	1
chr3:10 070 465	208	Retroposon (SVA_F)	1
chr3:11 487 519	522	Retroposon (SVA_F)	1
chr3:12 095 537	325	SINE (AluY)	1
chr3:18 993 945	331	SINE (AluY)	1
chr3:25 249 858	71	LINE (L1M2)	1
chr3:28 665 552	268	SINE (AluY)	1
chr3:31 839 889	327	SINE (AluYb8)	1
chr3:35 469 102	65	LTR (LTR12_v)	1
chr3:48 483 715	47	Retroposon (SVA_F)	1
chr3:50 841 730	331	SINE (AluYb8)	1
chr3:51 249 632	77	Retroposon (SVA_D)	1
chr3:75 289 661	222	Retroposon (SVA_F)	1
chr3:79 502 727	40	LTR (LTR12C)	1
chr3:80 915 723	308	SINE (AluYb8)	1
chr3:83 254 913	136	SINE (AluYk2)	1
chr3:87 471 316	279	SINE (AluYa5)	1
chr3:91 345 076	143	LTR (MLT1D)	1
chr3:95 745 261	47	Retroposon (SVA_B)	1
chr3:103 734 535	312	SINE (AluYa5)	1
chr3:106 111 381	456	Retroposon (SVA_F)	1
chr3:106 508 513	28	DNA (HSMAR2)	1
chr3:107 335 062	34	LINE (L1HS)	1
chr3:111 444 270	31	LINE (L1P3)	1
chr3:112 205 623	49	LINE (L1P3)	1
chr3:117 050 497	39	Retroposon (SVA_D)	1
chr3:124 922 697	135	SINE (AluSx)	1
chr3:128 676 364	312	SINE (AluYe5)	1
chr3:130 219 573	318	SINE (AluYe5)	1
chr3:136 893 195	105	LINE (L1P5)	1
chr3:143 475 998	314	SINE (AluYa5)	1
chr3:151 664 878	77	LTR (HERV9N-int)	1
chr3:151 820 689	171	SINE (AluYa5)	1
chr3:153 444 920	150	SINE (AluY)	1
chr3:157 848 540	37	SINE (Alu)	1
chr3:166 644 514	340	SINE (AluYa5)	1
chr3:166 672 433	312	SINE (AluY)	1
chr3:174 692 945	321	SINE (AluYb8)	1
chr3:176 373 528	154	LINE (L1HS)	1
chr3:176 425 229	305	SINE (AluYa5)	1
chr3:178 393 249	329	SINE (AluYb8)	1
chr3:182 153 141	129	LINE (L1P3)	1
chr3:197 823 074	31	SINE (Alu)	1
chr3:197 847 677	57	DNA (MADE1)	1
chr4:550 879	267	Retroposon (SVA_A)	1
chr4:1 308 027	317	SINE (AluYk2)	1
chr4:1 319 643	132	SINE (AluJb)	1
chr4:4 357 815	132	LINE (L1MB3)	1
chr4:9 449 339	137	LINE (L1M3)	1
chr4:13 761 218	145	Retroposon (SVA_E)	1
chr4:14 955 276	114	LTR (MSTB)	1
chr4:15 615 466	237	LTR (LTR12C)	1
chr4:31 839 792	308	SINE (AluYg6)	1
chr4:40 074 275	36	SINE (AluSx4)	1
chr4:42 086 022	315	SINE (AluYa5)	1
chr4:43 397 964	337	SINE (AluY)	1
chr4:43 846 679	39	LTR (LTR12E)	1
chr4:45 208 622	111	Retroposon (SVA_A)	1
chr4:46 378 053	292	Retroposon (SVA_F)	1
chr4:47 494 499	314	SINE (AluYb8)	1
chr4:47 542 099	333	SINE (AluY)	1
chr4:52 081 944	147	LINE (L3)	1
chr4:52 465 599	47	Retroposon (SVA_F)	1
chr4:54 154 800	160	LTR (LTR12C)	1
chr4:54 993 952	159	LTR (LTR12C)	1
chr4:63 062 067	184	LTR (LTR12E)	1
chr4:66 240 879	318	SINE (AluYa5)	1
chr4:67 098 159	309	SINE (AluY)	1
chr4:85 583 924	72	LINE (L1HS)	1
chr4:85 877 580	34	SINE (Alu)	1
chr4:98 046 002	54	LINE (L1M3de)	1
chr4:103 823 449	303	SINE (AluYa5)	1
chr4:106 399 078	63	LINE (L1M4c)	1
chr4:109 597 329	95	Retroposon (SVA_F)	1
chr4:109 597 452	98	Retroposon (SVA_F)	1
chr4:114 628 762	317	SINE (AluYb8)	1
chr4:118 853 560	317	SINE (AluYa5)	1
chr4:120 661 088	326	SINE (AluYb8)	1
chr4:124 026 067	292	SINE (AluYb8)	1
chr4:134 001 190	306	SINE (AluYb9)	1
chr4:134 209 110	327	SINE (AluY)	1
chr4:136 885 359	139	SINE (AluYa5)	1
chr4:141 691 101	48	LTR (THE1D)	1
chr4:147 132 785	324	SINE (AluY)	1
chr4:150 660 237	97	Retroposon (SVA_F)	1
chr4:150 953 967	79	Retroposon (SVA_A)	1
chr4:151 214 784	126	Retroposon (SVA_F)	1
chr4:159 524 187	126	Retroposon (SVA_F)	1
chr4:163 836 593	223	SINE (AluY)	1
chr4:170 166 495	36	Retroposon (SVA_D)	1
chr4:170 507 632	316	SINE (AluY)	1
chr4:174 290 427	311	SINE (AluYe5)	1
chr4:175 181 019	62	LINE (L1PREC2)	1
chr4:178 277 156	320	SINE (AluYa5)	1
chr4:183 736 102	49	Retroposon (SVA_D)	1
chr4:188 393 872	314	SINE (AluY)	1
chr4:189 108 732	54	LTR (MER57-int)	1
chr4:189 404 991	71	LTR (MST-int)	1
chr4:189 484 408	60	LTR (HERVH-int)	1
chr4:189 508 192	151	LINE (L1M4)	1
chr5:1 585 386	314	SINE (AluY)	1
chr5:1 586 019	38	Retroposon (SVA_D)	1
chr5:1 812 525	311	SINE (AluYa5)	1
chr5:4 075 719	319	SINE (AluYa5)	1
chr5:5 595 126	305	SINE (AluYe5)	1
chr5:16 277 322	38	Retroposon (SVA_D)	1
chr5:16 716 503	310	SINE (AluYg6)	1
chr5:17 024 109	183	SINE (AluSx)	1
chr5:17 712 495	332	SINE (AluY)	1
chr5:20 471 978	279	LINE (L2a)	1
chr5:34 113 145	321	SINE (AluYa5)	1
chr5:54 087 760	65	SINE (AluYk2)	1
chr5:55 433 459	334	SINE (AluYb8)	1
chr5:55 569 961	319	SINE (AluY)	1
chr5:55 696 695	293	Retroposon (SVA_A)	1
chr5:56 632 138	309	SINE (AluYa5)	1
chr5:62 339 522	310	SINE (AluY)	1
chr5:64 476 133	47	LINE (L1P2)	1
chr5:65 940 635	48	Retroposon (SVA_F)	1
chr5:69 515 538	96	Retroposon (SVA_F)	1
chr5:77 043 481	48	Retroposon (SVA_F)	1
chr5:77 395 389	313	SINE (AluY)	1
chr5:77 794 938	47	Retroposon (SVA_F)	1
chr5:84 943 815	680	LINE (L1HS)	1
chr5:87 076 864	295	SINE (AluYa5)	1
chr5:113 935 587	78	LTR (LTR62)	1
chr5:115 404 023	289	SINE (AluYe5)	1
chr5:117 973 457	176	LTR (MST-int)	1
chr5:134 427 214	300	SINE (AluYa5)	1
chr5:149 537 753	323	SINE (AluYa5)	1
chr5:151 982 651	48	LINE (L1PBa)	1
chr5:155 060 117	42	LINE (L1P1)	1
chr5:159 290 155	314	SINE (AluYa5)	1
chr5:162 804 935	314	SINE (AluY)	1
chr5:178 458 165	62	LINE (L1MC5)	1
chr6:1 051 552	186	LTR (MSTC)	1
chr6:7 441 878	81	LTR (LTR12D)	1
chr6:11 896 739	37	LINE (L1MC)	1
chr6:13 521 017	329	SINE (AluYb8)	1
chr6:18 346 153	309	SINE (AluYa5)	1
chr6:19 940 517	400	Retroposon (SVA_F)	1
chr6:31 329 004	343	SINE (AluSx)	1
chr6:32 547 335	86	LTR (LTR12C)	1
chr6:32 719 390	314	SINE (AluY)	1
chr6:32 720 800	332	SINE (AluYe5)	1
chr6:32 805 657	314	SINE (AluYa5)	1
chr6:34 398 194	150	Retroposon (SVA_F)	1
chr6:37 000 766	324	SINE (AluYb8)	1
chr6:43 927 736	316	SINE (AluY)	1
chr6:49 487 167	104	LINE (L1MC5)	1
chr6:52 969 272	73	SINE (AluSq2)	1
chr6:53 744 881	282	SINE (AluY)	1
chr6:60 676 390	42	LTR (MLT1G1)	1
chr6:62 587 058	43	LTR (HERVH-int)	1
chr6:63 052 338	84	LINE (L1PREC2)	1
chr6:67 072 446	314	SINE (AluYb8)	1
chr6:68 932 874	326	SINE (AluYk2)	1
chr6:77 679 471	38	DNA (Tigger3c)	1
chr6:81 587 704	321	SINE (AluY)	1
chr6:82 633 657	57	LINE (L1P1)	1
chr6:85 220 081	101	LINE (L1M1)	1
chr6:96 497 728	68	LINE (L1P3)	1
chr6:96 569 793	322	SINE (AluYb8)	1
chr6:96 639 702	96	LINE (L1P1)	1
chr6:99 650 398	39	Retroposon (SVA_F)	1
chr6:102 510 590	315	SINE (AluYa5)	1
chr6:107 078 566	137	SINE (AluY)	1
chr6:107 803 221	36	Retroposon (SVA_D)	1
chr6:114 768 706	105	SINE (AluSc)	1
chr6:120 247 099	318	SINE (AluYk2)	1
chr6:121 840 534	102	LINE (L2a)	1
chr6:122 848 426	175	Retroposon (SVA_F)	1
chr6:130 952 342	320	SINE (AluYb8)	1
chr6:136 151 778	70	SINE (AluSg)	1
chr6:136 933 052	277	SINE (AluYa5)	1
chr6:141 449 731	318	SINE (AluYa5)	1
chr6:143 630 226	311	SINE (AluYa5)	1
chr6:146 455 384	60	LTR (HERVH-int)	1
chr6:163 393 182	319	SINE (AluYe6)	1
chr6:166 711 308	318	SINE (AluYb9)	1
chr6:170 185 527	330	SINE (AluY)	1
chr7:6 904 658	58	LTR (HERVH-int)	1
chr7:10 465 285	225	Retroposon (SVA_A)	1
chr7:23 851 399	60	LTR (MSTA)	1
chr7:26 148 247	92	Retroposon (SVA_F)	1
chr7:26 148 327	94	Retroposon (SVA_F)	1
chr7:37 797 033	310	SINE (AluYe5)	1
chr7:38 720 097	322	SINE (AluYb8)	1
chr7:39 710 092	331	SINE (AluYb8)	1
chr7:42 608 043	321	SINE (AluYa5)	1
chr7:44 992 612	202	Retroposon (SVA_A)	1
chr7:45 749 603	323	SINE (AluYa5)	1
chr7:51 899 407	47	LTR (MLT1A0)	1
chr7:54 640 676	60	SINE (Alu)	1
chr7:55 783 652	304	SINE (AluY)	1
chr7:56 177 209	321	SINE (AluYb8)	1
chr7:64 419 799	324	SINE (AluY)	1
chr7:64 809 487	125	Retroposon (SVA_F)	1
chr7:67 889 013	38	Retroposon (SVA_D)	1
chr7:71 737 530	106	LTR (LTR12C)	1
chr7:74 809 479	193	SINE (AluYa5)	1
chr7:76 937 894	318	SINE (AluY)	1
chr7:77 509 892	591	Retroposon (SVA_F)	1
chr7:77 533 994	174	Retroposon (SVA_F)	1
chr7:81 043 607	40	LTR (LTR12C)	1
chr7:83 460 624	62	LTR (HERVH-int)	1
chr7:84 299 804	69	SINE (FLAM_C)	1
chr7:95 149 736	327	SINE (AluYb8)	1
chr7:101 359 188	222	Retroposon (SVA_A)	1
chr7:109 017 025	51	LINE (L1PREC2)	1
chr7:109 643 279	326	SINE (AluYb8)	1
chr7:110 844 692	96	LINE (L1HS)	1
chr7:114 192 099	48	SINE (AluSg)	1
chr7:128 289 264	315	SINE (AluYi6)	1
chr7:128 553 002	33	SINE (AluSq)	1
chr7:128 577 275	307	Retroposon (SVA_B)	1
chr7:129 517 319	317	SINE (AluSx3)	1
chr7:131 224 137	144	SINE (AluJb)	1
chr7:132 166 350	328	SINE (AluY)	1
chr7:136 494 045	329	SINE (AluYe5)	1
chr7:136 576 160	316	LTR (HERVL-int)	1
chr7:138 735 865	42	SINE (AluSz)	1
chr7:139 101 477	378	Retroposon (SVA_A)	1
chr7:150 506 304	47	Retroposon (SVA_F)	1
chr7:152 540 441	130	SINE (AluSx)	1
chr7:155 066 495	317	SINE (AluYk2)	1
chr7:155 096 901	73	Retroposon (SVA_B)	1
chr7:158 309 264	32	LTR (MLT2A2)	1
chr8:2 089 226	44	SINE (Alu)	1
chr8:4 595 369	94	LINE (L1HS)	1
chr8:6 196 794	91	LINE (L1P2)	1
chr8:9 153 996	48	Retroposon (SVA_F)	1
chr8:9 950 379	323	SINE (AluYb8)	1
chr8:13 059 195	154	SINE (AluSx4)	1
chr8:16 245 296	275	SINE (AluYa5)	1
chr8:22 625 878	328	SINE (AluY)	1
chr8:25 315 133	299	SINE (AluYa5)	1
chr8:33 904 132	284	SINE (AluY)	1
chr8:35 211 503	307	SINE (AluYa5)	1
chr8:41 412 941	334	SINE (AluYb8)	1
chr8:43 179 659	97	Retroposon (SVA_F)	1
chr8:54 125 422	223	Retroposon (SVA_F)	1
chr8:61 752 520	101	Retroposon (SVA_F)	1
chr8:64 686 416	77	Retroposon (SVA_F)	1
chr8:68 069 556	328	SINE (AluYb8)	1
chr8:69 245 774	39	Retroposon (SVA_E)	1
chr8:71 293 804	324	SINE (AluYa5)	1
chr8:74 463 097	317	SINE (AluYa5)	1
chr8:84 525 028	307	SINE (AluYa5)	1
chr8:86 067 390	320	SINE (AluYb8)	1
chr8:86 583 027	33	SINE (Alu)	1
chr8:86 807 595	35	LINE (L1PA4)	1
chr8:86 964 152	73	LTR (MER52-int)	1
chr8:97 447 378	31	SINE (Alu)	1
chr8:106 195 649	311	SINE (AluYb9)	1
chr8:107 110 857	72	SINE (AluY)	1
chr8:123 667 928	319	SINE (AluYa5)	1
chr8:124 877 714	282	SINE (AluYa5)	1
chr8:128 825 943	177	Retroposon (SVA_F)	1
chr8:131 341 813	323	SINE (AluYa5)	1
chr8:134 867 666	112	LINE (L3)	1
chr8:135 771 732	39	LTR (HERVH-int)	1
chr8:138 313 721	312	SINE (AluY)	1
chr8:140 037 950	330	SINE (AluYa5)	1
chr8:140 501 180	189	LINE (L2)	1
chr8:140 950 042	69	LTR (MER52A)	1
chr9:848 895	334	SINE (AluYb9)	1
chr9:2 351 286	315	SINE (AluY)	1
chr9:7 852 522	327	SINE (AluYb9)	1
chr9:8 102 217	79	LINE (L1P4)	1
chr9:15 234 394	125	Retroposon (SVA_F)	1
chr9:16 977 542	38	Retroposon (SVA_F)	1
chr9:19 365 709	95	SINE (AluYa5)	1
chr9:21 127 605	29	LINE (L1P1)	1
chr9:22 288 707	335	SINE (AluYk2)	1
chr9:26 492 841	36	Retroposon (SVA_F)	1
chr9:28 195 374	312	SINE (AluYa5)	1
chr9:28 960 602	322	SINE (AluY)	1
chr9:31 796 037	43	LINE (L1M3)	1
chr9:34 115 379	299	SINE (AluY)	1
chr9:34 169 254	117	SINE (AluJb)	1
chr9:34 904 794	102	LINE (L1PB)	1
chr9:35 018 978	63	LINE (L1PA10)	1
chr9:62 603 942	325	SINE (AluY)	1
chr9:67 083 505	299	SINE (AluY)	1
chr9:70 974 307	132	SINE (AluY)	1
chr9:72 616 616	313	SINE (AluY)	1
chr9:74 197 755	61	Retroposon (SVA_F)	1
chr9:90 432 247	306	SINE (AluY)	1
chr9:94 147 772	315	SINE (AluYa5)	1
chr9:100 667 656	68	LTR (MER52A)	1
chr9:112 514 852	225	Retroposon (SVA_B)	1
chr9:120 292 891	315	SINE (AluYk2)	1
chr9:121 971 181	299	Retroposon (SVA_E)	1
chr9:123 802 496	79	LINE (L2)	1
chr9:125 458 887	432	Retroposon (SVA_E)	1
chr9:125 577 664	257	Retroposon (SVA_F)	1
chr9:125 623 758	47	Retroposon (SVA_F)	1
chr9:129 514 654	70	LTR (MER52A)	1
chr9:131 370 206	65	SINE (Alu)	1
chr10:5 032 219	84	LTR (LTR12C)	1
chr10:6 206 499	76	Retroposon (SVA_F)	1
chr10:6 206 834	110	Retroposon (SVA_D)	1
chr10:8 869 284	492	Retroposon (SVA_F)	1
chr10:9 469 017	323	SINE (AluYa5)	1
chr10:17 950 565	117	LTR (LTR12D)	1
chr10:25 756 474	208	LTR (LTR12E)	1
chr10:27 640 988	319	SINE (AluYb8)	1
chr10:28 813 597	315	SINE (AluYa5)	1
chr10:28 816 354	312	SINE (AluY)	1
chr10:30 607 170	125	SINE (AluSx)	1
chr10:36 304 692	319	SINE (AluY)	1
chr10:39 479 348	341	LINE (L1P1)	1
chr10:52 707 167	322	SINE (AluY)	1
chr10:53 046 194	313	SINE (AluYe5)	1
chr10:55 002 597	62	LTR (LOR1-int)	1
chr10:60 365 085	294	SINE (AluYb8)	1
chr10:62 928 956	39	Retroposon (SVA_A)	1
chr10:66 576 999	327	SINE (AluY)	1
chr10:67 842 647	35	LTR (MSTB2)	1
chr10:68 235 132	326	SINE (AluYb8)	1
chr10:69 850 406	317	SINE (AluY)	1
chr10:69 992 832	491	Retroposon (SVA_E)	1
chr10:70 239 931	110	Retroposon (SVA_A)	1
chr10:71 869 465	123	Retroposon (SVA_F)	1
chr10:71 869 977	39	Retroposon (SVA_C)	1
chr10:71 902 232	313	SINE (AluYa5)	1
chr10:75 333 727	146	Retroposon (SVA_C)	1
chr10:88 055 211	319	SINE (AluYa5)	1
chr10:92 674 642	127	Retroposon (SVA_F)	1
chr10:92 975 822	224	Retroposon (SVA_A)	1
chr10:99 625 138	101	LTR (LTR12)	1
chr10:102 036 205	141	Retroposon (SVA_F)	1
chr10:104 057 438	192	SINE (AluYb8)	1
chr10:107 231 509	321	SINE (AluYa5)	1
chr10:108 693 707	833	LINE (L1HS)	1
chr10:112 314 098	311	SINE (AluY)	1
chr10:119 261 053	48	Retroposon (SVA_F)	1
chr10:120 215 110	392	Retroposon (SVA_F)	1
chr10:122 976 472	318	SINE (AluY)	1
chr11:428 013	320	SINE (AluYe5)	1
chr11:696 721	134	SINE (AluJb)	1
chr11:2 238 145	60	LTR (ERVL-B4-int)	1
chr11:2 332 518	39	Retroposon (SVA_B)	1
chr11:3 246 565	142	SINE (AluYa5)	1
chr11:5 114 182	178	LINE (L1P3)	1
chr11:5 194 322	40	LTR (LTR12E)	1
chr11:13 791 469	335	SINE (AluYb9)	1
chr11:19 860 077	224	Retroposon (SVA_E)	1
chr11:20 548 707	323	Retroposon (SVA_E)	1
chr11:25 583 576	324	SINE (AluYb8)	1
chr11:37 684 733	313	SINE (AluYa5)	1
chr11:38 779 509	315	SINE (AluYa5)	1
chr11:41 072 278	87	DNA (Tigger1)	1
chr11:45 738 485	275	Retroposon (SVA_E)	1
chr11:47 429 529	41	SINE (AluJb)	1
chr11:48 911 556	313	SINE (AluY)	1
chr11:59 645 320	382	Retroposon (SVA_E)	1
chr11:61 377 728	311	SINE (AluYk12)	1
chr11:63 893 356	258	LINE (L1MB8)	1
chr11:65 239 594	127	Retroposon (SVA_F)	1
chr11:67 655 021	311	SINE (AluY)	1
chr11:68 301 828	132	SINE (AluY)	1
chr11:74 066 263	47	LINE (L1PA5)	1
chr11:74 353 855	75	Retroposon (SVA_C)	1
chr11:77 098 714	222	Retroposon (SVA_D)	1
chr11:77 490 293	47	Retroposon (SVA_F)	1
chr11:81 124 396	30	LTR (HERVH-int)	1
chr11:89 175 768	323	SINE (AluYa5)	1
chr11:90 267 331	185	LINE (L1P3)	1
chr11:91 420 412	167	SINE (AluYc)	1
chr11:95 135 520	42	SINE (Alu)	1
chr11:95 320 834	49	Retroposon (SVA_F)	1
chr11:95 321 129	50	Retroposon (SVA_F)	1
chr11:98 770 105	208	Retroposon (SVA_C)	1
chr11:103 330 537	322	SINE (AluYb8)	1
chr11:104 194 493	204	Retroposon (SVA_E)	1
chr11:104 274 010	317	SINE (AluYa5)	1
chr11:106 173 850	314	SINE (AluYa5)	1
chr11:106 195 313	136	SINE (AluSq)	1
chr11:106 299 739	332	SINE (AluY)	1
chr11:111 211 677	42	LINE (L1MC)	1
chr11:116 130 885	191	LTR (HERVIP10FH-int)	1
chr11:119 253 538	265	Retroposon (SVA_B)	1
chr11:125 863 462	331	Retroposon (SVA_F)	1
chr11:127 871 039	289	SINE (AluYb8)	1
chr11:131 308 276	134	SINE (AluSz)	1
chr11:134 435 746	316	LINE (L1HS)	1
chr12:676 192	133	SINE (AluYk2)	1
chr12:1 543 322	423	SINE (AluY)	1
chr12:4 661 707	310	SINE (AluYg6)	1
chr12:5 660 425	298	SINE (AluYd8)	1
chr12:9 216 628	311	SINE (AluY)	1
chr12:9 349 116	79	Retroposon (SVA_A)	1
chr12:10 081 587	318	SINE (AluY)	1
chr12:10 525 737	326	LTR (LTR57-int)	1
chr12:14 020 934	310	SINE (AluYa5)	1
chr12:25 309 997	327	SINE (AluY)	1
chr12:26 784 936	38	Retroposon (SVA_D)	1
chr12:29 670 962	312	SINE (AluYa5)	1
chr12:31 923 477	315	SINE (AluYg6)	1
chr12:32 098 864	144	SINE (AluSx)	1
chr12:38 330 463	92	Retroposon (SVA_C)	1
chr12:48 332 467	196	Retroposon (SVA_E)	1
chr12:48 500 576	214	Retroposon (SVA_F)	1
chr12:49 788 823	85	SINE (AluY)	1
chr12:53 354 590	319	SINE (AluY)	1
chr12:56 558 296	304	SINE (AluSx)	1
chr12:57 665 178	155	Retroposon (SVA_A)	1
chr12:64 029 802	87	SINE (AluSz6)	1
chr12:64 204 038	84	LINE (L1PA11)	1
chr12:64 783 846	187	SINE (AluSp)	1
chr12:71 131 684	320	SINE (AluYb9)	1
chr12:71 725 885	27	DNA (HSMAR2)	1
chr12:75 537 304	316	SINE (AluYg6)	1
chr12:78 605 707	305	SINE (AluYb8)	1
chr12:83 692 332	322	SINE (AluYb8)	1
chr12:85 929 669	315	SINE (AluYg6)	1
chr12:86 811 026	109	LINE (L1MD)	1
chr12:87 477 038	320	SINE (AluY)	1
chr12:87 944 381	306	SINE (AluYa5)	1
chr12:92 118 740	28	DNA (HSMAR2)	1
chr12:94 868 527	218	DNA (Tigger1)	1
chr12:95 907 463	50	Retroposon (SVA_F)	1
chr12:100 294 427	196	Retroposon (SVA_E)	1
chr12:104 923 205	186	SINE (AluYb9)	1
chr12:106 209 872	284	LINE (L1P3)	1
chr12:125 036 157	161	Retroposon (SVA_C)	1
chr12:127 906 519	114	LINE (L1M5)	1
chr12:129 970 499	315	SINE (AluY)	1
chr12:132 789 701	56	SINE (AluYc3)	1
chr13:19 251 656	416	LINE (L1PBa)	1
chr13:19 779 535	47	Retroposon (SVA_F)	1
chr13:21 915 650	216	LINE (L1HS)	1
chr13:22 859 015	46	Retroposon (SVA_F)	1
chr13:26 242 116	315	SINE (AluY)	1
chr13:26 806 342	186	Retroposon (SVA_A)	1
chr13:37 215 551	165	SINE (AluSx)	1
chr13:39 789 556	27	LTR (LTR10F)	1
chr13:40 955 542	97	Retroposon (SVA_F)	1
chr13:41 881 714	126	Retroposon (SVA_A)	1
chr13:42 141 027	28	LINE (L1PA5)	1
chr13:42 476 441	73	Retroposon (SVA_A)	1
chr13:42 688 562	236	SINE (AluY)	1
chr13:46 521 202	318	SINE (AluYa5)	1
chr13:51 077 923	38	Retroposon (SVA_C)	1
chr13:55 612 425	323	SINE (AluYk2)	1
chr13:57 014 879	114	SINE (AluY)	1
chr13:58 046 916	290	SINE (AluYb9)	1
chr13:58 773 222	85	LTR (LTR12C)	1
chr13:58 822 744	315	SINE (AluYg6)	1
chr13:60 037 032	130	LINE (L1MEd)	1
chr13:62 146 931	309	SINE (AluYa5)	1
chr13:68 249 657	107	SINE (AluJb)	1
chr13:78 077 535	314	SINE (AluYa5)	1
chr13:78 697 449	316	SINE (AluYm1)	1
chr13:86 740 689	288	SINE (AluYa5)	1
chr13:87 043 983	255	SINE (AluYe5)	1
chr13:89 749 575	326	SINE (AluYb8)	1
chr13:90 291 100	57	LTR (HERVP71A-int)	1
chr13:91 609 018	322	SINE (AluYg6)	1
chr13:91 861 711	295	SINE (AluYa5)	1
chr13:92 538 791	212	LINE (L1P3)	1
chr13:93 176 152	301	SINE (AluYa5)	1
chr13:99 430 356	319	SINE (AluY)	1
chr13:105 062 568	288	SINE (AluYb8)	1
chr13:107 887 391	62	LTR (MSTA)	1
chr13:112 866 638	313	SINE (AluYa5)	1
chr13:112 937 994	217	LTR (MER101)	1
chr13:113 357 053	132	SINE (AluSc)	1
chr14:22 637 543	523	Retroposon (SVA_E)	1
chr14:24 473 723	118	LTR (LTR12D)	1
chr14:31 408 945	35	SINE (AluYb8)	1
chr14:40 110 466	324	SINE (AluYa5)	1
chr14:40 123 223	131	SINE (AluYe5)	1
chr14:45 389 772	227	Retroposon (SVA_A)	1
chr14:52 837 362	55	LTR (MER51B)	1
chr14:53 311 386	324	SINE (AluYa5)	1
chr14:59 987 435	326	SINE (AluYb8)	1
chr14:60 065 669	319	SINE (AluYj4)	1
chr14:60 108 770	313	SINE (AluYa5)	1
chr14:73 353 583	134	SINE (AluSz6)	1
chr14:89 608 202	143	SINE (AluY)	1
chr14:90 797 289	171	SINE (AluYc)	1
chr14:98 028 038	330	SINE (AluYb8)	1
chr14:98 678 770	53	SINE (Alu)	1
chr14:100 345 058	95	Retroposon (SVA_F)	1
chr14:101 358 105	70	LTR (MLT1H)	1
chr14:102 562 101	311	SINE (AluY)	1
chr14:105 111 338	223	Retroposon (SVA_F)	1
chr14:105 111 436	225	Retroposon (SVA_F)	1
chr15:23 103 992	316	SINE (AluY)	1
chr15:27 930 643	392	LINE (L1HS)	1
chr15:32 821 095	312	SINE (AluYc)	1
chr15:36 554 711	346	SINE (AluYa5)	1
chr15:44 209 805	288	SINE (AluYb8)	1
chr15:45 277 713	311	SINE (AluYa5)	1
chr15:45 290 055	31	SINE (Alu)	1
chr15:45 293 036	47	Retroposon (SVA_F)	1
chr15:47 279 101	87	LINE (L1P1)	1
chr15:56 541 721	296	SINE (AluY)	1
chr15:60 365 043	311	SINE (AluYa5)	1
chr15:60 924 332	322	SINE (AluY)	1
chr15:70 116 282	312	SINE (AluY)	1
chr15:71 757 533	132	SINE (AluJo)	1
chr15:71 769 278	124	Retroposon (SVA_F)	1
chr15:71 769 394	127	Retroposon (SVA_F)	1
chr15:72 347 195	319	SINE (AluYa5)	1
chr15:72 396 770	527	Retroposon (SVA_F)	1
chr15:75 481 597	400	Retroposon (SVA_F)	1
chr15:75 503 556	192	Retroposon (SVA_D)	1
chr15:76 230 513	82	SINE (Alu)	1
chr15:78 132 274	163	SINE (AluSx4)	1
chr15:80 355 807	93	SINE (AluSp)	1
chr15:80 370 223	315	SINE (AluY)	1
chr15:81 100 242	315	SINE (AluYa5)	1
chr15:84 854 228	317	SINE (AluYa5)	1
chr15:88 552 498	146	Retroposon (SVA_F)	1
chr15:88 941 916	118	Retroposon (SVA_A)	1
chr15:89 854 811	78	Retroposon (SVA_F)	1
chr15:94 621 784	305	SINE (AluYk2)	1
chr15:95 047 055	45	LTR (LTR12_v)	1
chr16:7 491 379	315	SINE (AluYd8)	1
chr16:8 368 176	311	SINE (AluYa5)	1
chr16:11 940 567	35	SINE (AluSg4)	1
chr16:21 227 729	317	SINE (AluY)	1
chr16:24 316 243	316	SINE (AluYa5)	1
chr16:31 105 127	143	Retroposon (SVA_F)	1
chr16:36 260 384	238	LINE (L1HS)	1
chr16:50 358 348	28	SINE (AluJb)	1
chr16:57 291 415	180	SINE (AluYa5)	1
chr16:65 448 283	314	SINE (AluY)	1
chr16:71 733 511	74	SINE (AluSp)	1
chr16:81 095 628	27	SINE (Alu)	1
chr16:82 131 072	300	SINE (AluY)	1
chr16:89 125 955	33	LINE (L1MD)	1
chr16:89 224 966	321	SINE (AluY)	1
chr17:598 874	394	Retroposon (SVA_F)	1
chr17:1 276 784	432	SINE (AluSx)	1
chr17:1 690 028	38	Retroposon (SVA_D)	1
chr17:2 448 174	125	Retroposon (SVA_D)	1
chr17:3 112 658	39	Retroposon (SVA_D)	1
chr17:3 113 047	39	Retroposon (SVA_D)	1
chr17:3 544 162	132	SINE (AluSg)	1
chr17:4 274 926	27	SINE (Alu)	1
chr17:4 411 686	257	LINE (L1HS)	1
chr17:5 069 184	326	SINE (AluSx)	1
chr17:16 095 665	104	Retroposon (SVA_D)	1
chr17:16 699 502	133	SINE (AluYk2)	1
chr17:18 888 657	351	Retroposon (SVA_F)	1
chr17:27 212 309	607	Retroposon (SVA_F)	1
chr17:28 604 067	97	Retroposon (SVA_F)	1
chr17:31 675 941	65	LTR (LTR12)	1
chr17:42 973 206	273	Retroposon (SVA_F)	1
chr17:44 181 115	253	Retroposon (SVA_A)	1
chr17:45 180 536	161	SINE (AluYc)	1
chr17:46 210 497	69	LINE (CR1_Mam)	1
chr17:47 325 026	266	SINE (AluYa5)	1
chr17:53 879 754	320	SINE (AluYa5)	1
chr17:56 870 207	295	SINE (AluYh7)	1
chr17:60 552 104	226	Retroposon (SVA_F)	1
chr17:75 194 906	334	SINE (AluYb8)	1
chr17:75 298 385	137	SINE (AluSx3)	1
chr17:76 610 520	40	LTR (HERVH-int)	1
chr18:1 235 778	322	SINE (AluY)	1
chr18:9 058 019	183	LTR (LTR45B)	1
chr18:9 401 404	322	SINE (AluYa5)	1
chr18:12 980 715	48	Retroposon (SVA_F)	1
chr18:15 779 866	217	LINE (L1P1)	1
chr18:15 780 000	123	LINE (L1P1)	1
chr18:22 626 725	44	LINE (L1M4a1)	1
chr18:28 271 206	349	SINE (AluY)	1
chr18:29 997 108	32	LTR (THE1D-int)	1
chr18:30 220 881	320	SINE (AluY)	1
chr18:38 932 567	316	SINE (AluYa5)	1
chr18:46 190 419	31	SINE (Alu)	1
chr18:48 997 461	113	SINE (AluYb8)	1
chr18:49 621 064	243	SINE (AluSx)	1
chr18:49 799 846	36	Retroposon (SVA_D)	1
chr18:53 961 960	84	LINE (L1PA2)	1
chr18:54 236 358	166	LINE (L1HS)	1
chr18:57 632 999	409	Retroposon (SVA_F)	1
chr18:64 608 891	176	Retroposon (SVA_F)	1
chr18:64 609 239	96	Retroposon (SVA_F)	1
chr18:65 820 032	317	SINE (AluY)	1
chr18:68 731 922	315	SINE (AluYk2)	1
chr18:71 476 487	53	LINE (L1P3b)	1
chr18:76 241 968	323	SINE (AluYi6_4d)	1
chr18:76 851 079	311	SINE (AluYk2)	1
chr18:78 280 919	132	LINE (L1P4)	1
chr19:1 923 899	133	SINE (AluSx)	1
chr19:2 383 641	308	SINE (AluY)	1
chr19:4 965 572	165	SINE (AluSz6)	1
chr19:7 102 802	167	SINE (AluSx)	1
chr19:9 066 899	310	SINE (AluSx)	1
chr19:10 715 006	135	SINE (AluSz)	1
chr19:14 934 350	310	SINE (AluYa5)	1
chr19:15 965 984	316	SINE (AluY)	1
chr19:20 149 557	148	Retroposon (SVA_D)	1
chr19:22 926 686	174	Retroposon (SVA_A)	1
chr19:22 927 102	46	Retroposon (SVA_F)	1
chr19:23 734 248	314	SINE (AluYb8)	1
chr19:23 768 603	320	SINE (AluYa5)	1
chr19:28 732 919	598	LINE (L1P4)	1
chr19:39 905 477	311	SINE (AluSx)	1
chr19:40 648 236	98	Retroposon (SVA_F)	1
chr19:47 926 362	315	LINE (L1P4)	1
chr19:50 585 456	100	SINE (AluJb)	1
chr19:52 720 418	73	Retroposon (SVA_A)	1
chr19:52 720 518	74	Retroposon (SVA_A)	1
chr20:4 033 152	54	Retroposon (SVA_F)	1
chr20:6 665 190	63	DNA (MER33)	1
chr20:9 641 462	118	LTR (LTR12C)	1
chr20:16 850 145	325	SINE (AluYa5)	1
chr20:16 894 383	343	SINE (AluY)	1
chr20:18 689 891	175	SINE (AluJb)	1
chr20:28 790 008	45	LINE (L1P1)	1
chr20:29 307 454	180	SINE (AluSq)	1
chr20:29 316 550	128	LTR (LTR5A)	1
chr20:29 802 581	813	LTR (PRIMA41-int)	1
chr20:35 564 371	148	SINE (AluSg)	1
chr20:38 461 434	47	Retroposon (SVA_F)	1
chr20:39 582 022	310	SINE (AluYb8)	1
chr20:44 297 116	37	SINE (AluSp)	1
chr20:45 645 652	219	Retroposon (SVA_F)	1
chr20:47 525 869	146	Retroposon (SVA_E)	1
chr20:50 366 200	35	SINE (Alu)	1
chr20:55 145 299	315	SINE (AluYa5)	1
chr20:60 439 006	74	LINE (L1MD)	1
chr21:5 216 449	221	LINE (L1M3)	1
chr21:7 101 127	298	LTR (LTR43-int)	1
chr21:10 508 068	56	LINE (L1M3)	1
chr21:19 952 209	323	SINE (AluYa5)	1
chr21:20 142 805	314	SINE (AluY)	1
chr21:24 981 910	322	SINE (AluY)	1
chr21:25 125 106	318	SINE (AluYk2)	1
chr21:27 188 703	320	SINE (AluYa5)	1
chr21:32 482 933	67	SINE (AluJo)	1
chr21:34 011 406	311	SINE (AluYa5)	1
chr21:35 865 629	332	SINE (AluYk2)	1
chr21:37 685 531	316	SINE (AluYa5)	1
chr21:42 965 782	319	SINE (AluY)	1
chr21:44 468 497	135	SINE (AluSz)	1
chr22:15 830 534	136	SINE (AluSx)	1
chr22:17 567 654	357	SINE (AluYb8)	1
chr22:21 883 573	48	Retroposon (SVA_F)	1
chr22:22 644 845	315	SINE (AluSx)	1
chr22:25 277 728	46	Retroposon (SVA_F)	1
chr22:28 380 048	320	SINE (AluYa5)	1
chr22:30 597 428	159	LTR (LTR12C)	1
chr22:32 682 040	149	LINE (L2a)	1
chr22:34 034 609	325	SINE (AluY)	1
chr22:40 501 145	128	Retroposon (SVA_F)	1
chr22:40 744 913	174	Retroposon (SVA_F)	1
chr22:40 745 453	122	Retroposon (SVA_F)	1
chr22:41 294 871	382	Retroposon (SVA_F)	1
chr22:41 552 573	39	SINE (AluJb)	1
chr22:41 631 584	39	Retroposon (SVA_C)	1
chr22:42 818 815	313	SINE (AluYa5)	1
chr22:46 509 527	44	DNA (MER20)	1
chr22:49 669 732	150	LTR (LTR12C)	1
chrX:1 057 561	80	SINE (AluSg)	1
chrX:1 304 189	333	SINE (AluSx)	1
chrX:8 978 447	88	LINE (L1P4)	1
chrX:16 964 930	124	Retroposon (SVA_F)	1
chrX:24 709 079	128	Retroposon (SVA_F)	1
chrX:27 458 491	124	Retroposon (SVA_A)	1
chrX:34 249 205	394	LINE (L1P1)	1
chrX:40 211 095	336	Retroposon (SVA_E)	1
chrX:42 285 660	395	Retroposon (SVA_E)	1
chrX:45 040 273	164	Retroposon (SVA_F)	1
chrX:52 729 421	97	LINE (L1PA4)	1
chrX:53 772 507	127	Retroposon (SVA_F)	1
chrX:65 457 302	346	Retroposon (SVA_F)	1
chrX:66 519 345	52	LINE (L1PREC2)	1
chrX:70 350 008	115	Retroposon (SVA_D)	1
chrX:71 676 857	35	Retroposon (SVA_A)	1
chrX:75 334 743	38	Retroposon (SVA_B)	1
chrX:77 354 180	321	SINE (AluYa5)	1
chrX:78 265 511	223	Retroposon (SVA_F)	1
chrX:79 301 630	66	LTR (MER50B)	1
chrX:80 215 123	116	Retroposon (SVA_A)	1
chrX:84 754 818	120	LINE (L1MC)	1
chrX:85 754 473	49	LINE (L1P1)	1
chrX:86 872 340	117	LTR (HERVL-int)	1
chrX:89 128 143	264	LINE (L1PA12)	1
chrX:89 740 949	136	SINE (AluYc)	1
chrX:92 170 920	134	SINE (AluSq)	1
chrX:104 079 600	37	LINE (L1PREC2)	1
chrX:107 501 516	133	SINE (AluYb8)	1
chrX:115 436 029	295	SINE (AluYa5)	1
chrX:120 393 985	308	SINE (AluYa5)	1
chrX:120 758 975	216	LINE (L1HS)	1
chrX:124 128 744	223	Retroposon (SVA_F)	1
chrX:137 267 661	334	SINE (AluY)	1
chrX:138 269 886	50	LTR (LTR7)	1
chrX:146 808 266	323	SINE (AluYb8)	1
chrX:146 816 231	320	SINE (AluYb8)	1
chrY:11 349 044	102	SINE (AluSq2)	1
chrY:11 384 811	209	SINE (AluYa5)	1
chrY:56 867 594	131	SINE (AluSc)	1

• 2 231 TE insertions were found with an AF ≥ 0.5.

A Manhattan plot of AFs is shown below.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat family	Repeat subfamily	Unique	Total (lax)	Total (strict)
DNA	hAT	2	4	4
	TcMar	6	12	12
LINE	CR1	3	6	6
	L1	268	527	519
	L2	9	18	18
LTR	ERV1	97	184	170
	ERVK	15	30	28
	ERVL	35	69	65
Retroposon	SVA	394	757	665
SINE	Alu	1 523	3 028	3 006
	MIR	3	6	6
Total	-	2 355	4 641	4 499

2.1 Class I Elements

2.1.1 Distribution

1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name	Unique	Total (lax)	Total (strict)
SVA A	48	95	85
SVA B	15	30	27
SVA C	16	32	25
SVA D	19	38	37
SVA E	61	116	101
SVA F	232	440	384
SVA F1	3	6	6
Total	394	757	665

Click to show table with Alu counts by name.

Count of _Alu_ elements by name

Name	Unique	Total (lax)	Total (strict)
Alu	10	20	18
AluJb	33	64	61
AluJo	2	4	4
AluJr4	1	2	2
AluSc	7	13	12
AluSc8	5	10	10
AluSg	9	18	17
AluSg4	4	8	8
AluSg7	1	2	2
AluSp	10	20	20
AluSq	10	20	19
AluSq2	6	12	12
AluSx	60	117	112
AluSx1	1	2	2
AluSx3	7	14	14
AluSx4	5	10	9
AluSz	7	14	14
AluSz6	4	8	7
AluY	372	741	736
AluYa5	440	879	879
AluYa8	3	6	6
AluYb8	275	545	545
AluYb9	37	74	74
AluYc	24	48	48
AluYc3	1	2	1
AluYd8	11	22	22
AluYe5	47	94	94
AluYe6	1	2	2
AluYf1	4	8	8
AluYg6	34	68	68
AluYh7	5	10	10
AluYi6	5	10	10
AluYi6 4d	3	6	6
AluYj4	4	8	8
AluYk11	1	2	2
AluYk12	4	8	8
AluYk2	53	105	105
AluYk3	2	4	4
AluYk4	5	10	10
AluYm1	2	4	4
FLAM C	3	6	6
FRAM	5	8	7
Total	1 523	3 028	3 006

Click to show table with L1 counts by name.

Count of L1 elements by name

Name	Unique	Total (lax)	Total (strict)
L1HS	108	214	213
L1M1	7	14	14
L1M2	4	8	8
L1M2a1	1	2	2
L1M3	6	12	12
L1M3de	1	2	2
L1M4	4	7	6
L1M4b	1	2	2
L1M4c	1	2	2
L1M5	5	10	10
L1MA4	1	2	2
L1MB3	2	4	3
L1MB5	2	4	4
L1MB8	1	2	2
L1MC	2	4	4
L1MC1	1	2	2
L1MC3	1	2	2
L1MC4	2	4	4
L1MC4a	1	2	2
L1MC5	2	4	4
L1MCa	2	4	4
L1MD	2	4	4
L1MD3	1	2	2
L1ME1	1	2	2
L1ME2z	1	2	2
L1MEc	1	2	2
L1MEd	1	2	2
L1MEg	2	4	4
L1P1	22	43	42
L1P2	9	17	17
L1P3	12	23	21
L1P3b	1	2	2
L1P4	9	17	16
L1P4e	1	2	2
L1P5	5	9	9
L1PA10	2	4	4
L1PA11	1	2	2
L1PA12	2	4	4
L1PA15-16	1	2	2
L1PA16	2	4	4
L1PA2	7	14	14
L1PA3	2	4	4
L1PA4	5	10	10
L1PA6	2	4	4
L1PA7	3	6	6
L1PA8	1	1	1
L1PA8A	1	2	2
L1PB	3	6	6
L1PB1	3	6	6
L1PBa	2	4	4
L1PBb	1	2	2
L1PREC2	7	14	13
Total	268	527	519

2.1.2 Class II TEs on gene sequences

Click to show table with 1232 rows.

Position	Length	Type	Gene	Annotation	Occurrences
chr1:1 477 853	133	SINE (Alu)	ATAD3B	Promoter	2
chr1:1 477 853	133	SINE (Alu)	ATAD3B	Intron	2
chr1:1 993 703	145	SINE (Alu)	CFAP74	Intron	2
chr1:5 874 227	283	SINE (Alu)	NPHP4	Promoter	2
chr1:5 874 227	283	SINE (Alu)	NPHP4	Intron	2
chr1:7 018 123	182	SINE (Alu)	CAMTA1	Intron	2
chr1:7 114 731	48	LTR (ERVL)	CAMTA1	Intron	1
chr1:8 502 132	594	Retroposon (SVA)	RERE	Intron	1
chr1:9 170 366	317	SINE (Alu)	MIR34AHG	Intron	2
chr1:9 968 550	139	SINE (Alu)	NMNAT1	Intron	2
chr1:16 311 086	147	SINE (Alu)	FBXO42	Intron	2
chr1:16 424 204	134	SINE (Alu)	SPATA21	Intron	2
chr1:16 868 226	318	SINE (Alu)	CROCC	Intron	2
chr1:21 166 095	315	SINE (Alu)	EIF4G3	Intron	2
chr1:24 634 836	312	SINE (Alu)	SRRM1	Intron	2
chr1:28 994 949	313	SINE (Alu)	EPB41	Intron	2
chr1:29 100 312	322	SINE (Alu)	EPB41	Intron	2
chr1:33 052 502	101	Retroposon (SVA)	AK2	Intron	1
chr1:37 967 098	314	SINE (Alu)	SF3A3	Intron	2
chr1:38 485 066	75	SINE (Alu)	LINC01685	Intron	2
chr1:39 211 989	316	SINE (Alu)	MACF1	Intron	2
chr1:39 234 551	520	Retroposon (SVA)	MACF1	Intron	1
chr1:39 234 641	488	Retroposon (SVA)	MACF1	Intron	1
chr1:41 924 632	326	SINE (Alu)	HIVEP3	Intron	2
chr1:42 018 288	1 497	LINE (L1)	HIVEP3	Intron	2
chr1:44 876 572	397	Retroposon (SVA)	EIF2B3	Promoter	2
chr1:44 876 572	397	Retroposon (SVA)	EIF2B3	Intron	2
chr1:45 223 068	215	Retroposon (SVA)	ZSWIM5	Intron	2
chr1:50 446 975	337	SINE (Alu)	FAF1	Intron	2
chr1:51 711 474	317	Retroposon (SVA)	OSBPL9	Intron	1
chr1:52 869 959	98	Retroposon (SVA)	ZYG11A	Intron	2
chr1:54 561 764	176	Retroposon (SVA)	ACOT11	Intron	2
chr1:57 606 184	211	SINE (Alu)	DAB1	Intron	2
chr1:58 272 333	270	SINE (Alu)	DAB1	Intron	2
chr1:58 739 631	307	SINE (Alu)	LOC112268263	Intron	2
chr1:62 996 278	318	SINE (Alu)	LINC01739	Intron	2
chr1:63 473 989	115	Retroposon (SVA)	ITGB3BP	Intron	2
chr1:64 492 377	342	SINE (Alu)	CACHD1	Intron	2
chr1:65 590 242	316	SINE (Alu)	LEPR	Intron	2
chr1:69 625 372	326	SINE (Alu)	LRRC7	Intron	2
chr1:70 062 872	331	SINE (Alu)	LRRC7	Intron	2
chr1:72 173 321	316	SINE (Alu)	NEGR1	Intron	2
chr1:74 727 204	3 702	LINE (L1)	CRYZ	Intron	2
chr1:77 168 628	307	SINE (Alu)	PIGK	Intron	2
chr1:79 116 389	307	SINE (Alu)	ADGRL4	Intron	2
chr1:81 846 355	322	SINE (Alu)	ADGRL2	Intron	2
chr1:83 144 049	1 737	LINE (L1)	LINC01362	Intron	2
chr1:87 825 866	120	SINE (Alu)	LOC107985518	Intron	2
chr1:89 797 987	79	Retroposon (SVA)	LRRC8D	Intron	1
chr1:89 905 000	269	SINE (Alu)	LRRC8D	Intron	2
chr1:90 534 118	318	SINE (Alu)	LINC02787	Promoter	2
chr1:91 768 794	332	SINE (Alu)	TGFBR3	Intron	2
chr1:92 701 961	323	SINE (Alu)	EVI5	Intron	2
chr1:97 252 071	324	SINE (Alu)	DPYD-AS1	Intron	2
chr1:99 144 969	299	SINE (Alu)	PLPPR5-AS1	Intron	2
chr1:107 599 843	308	SINE (Alu)	VAV3	Intron	2
chr1:109 177 355	76	Retroposon (SVA)	ELAPOR1	Intron	2
chr1:111 560 471	295	SINE (Alu)	RAP1A	Intron	2
chr1:112 193 371	328	SINE (Alu)	LINC02884	Intron	2
chr1:112 449 371	315	SINE (Alu)	CTTNBP2NL	Intron	2
chr1:112 847 902	314	SINE (Alu)	LINC01356	Intron	2
chr1:147 467 282	73	LINE (L1)	LINC00624	Intron	1
chr1:147 488 599	103	SINE (MIR)	LINC00624	Intron	2
chr1:147 653 127	306	SINE (Alu)	ACP6	Intron	2
chr1:147 949 446	117	Retroposon (SVA)	GPR89B	Intron	2
chr1:150 227 792	277	SINE (Alu)	ANP32E	Intron	2
chr1:150 990 241	336	SINE (Alu)	ANXA9	Intron	2
chr1:151 769 291	90	Retroposon (SVA)	OAZ3	Intron	2
chr1:155 700 905	347	Retroposon (SVA)	DAP3	Intron	2
chr1:155 954 588	320	SINE (Alu)	ARHGEF2	Intron	2
chr1:156 328 044	140	Retroposon (SVA)	CCT3	Intron	2
chr1:162 267 455	312	SINE (Alu)	NOS1AP	Intron	2
chr1:162 293 222	319	SINE (Alu)	NOS1AP	Intron	2
chr1:162 791 517	316	SINE (Alu)	HSD17B7	Intron	2
chr1:163 247 451	333	SINE (Alu)	RGS5	Intron	2
chr1:163 344 640	328	SINE (Alu)	NUF2	Intron	2
chr1:165 892 145	2 352	Retroposon (SVA)	UCK2	Promoter	2
chr1:165 892 145	2 352	Retroposon (SVA)	UCK2	Intron	2
chr1:167 743 624	317	SINE (Alu)	MPZL1	Intron	2
chr1:169 256 810	126	LINE (L1)	ATP1B1	Intron	2
chr1:169 555 627	619	LINE (L1)	F5	Intron	2
chr1:169 993 600	163	SINE (Alu)	KIFAP3	Intron	2
chr1:172 571 914	354	Retroposon (SVA)	SUCO	Intron	1
chr1:179 522 822	352	SINE (Alu)	AXDND1	Intron	2
chr1:181 619 208	322	SINE (Alu)	CACNA1E	Intron	2
chr1:181 632 139	282	SINE (Alu)	CACNA1E	Intron	2
chr1:182 451 704	323	SINE (Alu)	RGSL1	Intron	2
chr1:184 000 538	3 795	LINE (L1)	COLGALT2	Intron	2
chr1:192 857 342	76	Retroposon (SVA)	LOC105371665	Intron	2
chr1:192 857 702	175	Retroposon (SVA)	LOC105371665	Intron	2
chr1:196 792 226	323	SINE (Alu)	CFH	Intron	2
chr1:197 042 727	286	SINE (Alu)	F13B	Intron	2
chr1:198 500 207	319	SINE (Alu)	LOC105371677	Intron	2
chr1:198 846 183	283	SINE (Alu)	MIR181A1HG	Intron	2
chr1:199 360 533	320	SINE (Alu)	LINC02789	Intron	2
chr1:204 269 326	329	SINE (Alu)	PLEKHA6	Intron	2
chr1:204 375 912	329	SINE (Alu)	PLEKHA6	Intron	2
chr1:212 592 491	317	SINE (Alu)	ATF3	Intron	2
chr1:212 801 295	2 410	Retroposon (SVA)	TATDN3	Intron	2
chr1:219 010 830	100	LINE (L1)	LYPLAL1-DT	Intron	2
chr1:222 697 340	328	SINE (Alu)	AIDA	Intron	2
chr1:227 275 238	324	SINE (Alu)	CDC42BPA	Intron	2
chr1:227 314 750	135	SINE (Alu)	CDC42BPA	Intron	2
chr1:227 414 560	315	SINE (Alu)	LINC01641	Intron	2
chr1:230 949 403	302	SINE (Alu)	TTC13	Intron	2
chr1:233 206 358	314	SINE (Alu)	PCNX2	Intron	2
chr1:234 669 965	326	SINE (Alu)	LOC105373209	Intron	2
chr1:235 309 350	85	Retroposon (SVA)	ARID4B	Intron	2
chr1:235 635 569	167	LTR (ERVL)	GNG4	Intron	2
chr1:237 286 555	203	LINE (L1)	RYR2	Intron	2
chr1:237 405 893	319	SINE (Alu)	RYR2	Intron	2
chr1:239 616 844	312	SINE (Alu)	CHRM3	Intron	2
chr1:240 060 352	54	SINE (Alu)	FMN2	Intron	2
chr1:241 326 641	326	SINE (Alu)	RGS7	Intron	2
chr1:242 148 258	6 041	LINE (L1)	PLD5	Intron	2
chr1:245 826 009	324	SINE (Alu)	SMYD3	Intron	2
chr1:246 056 659	318	SINE (Alu)	SMYD3	Intron	2
chr1:246 243 399	331	SINE (Alu)	SMYD3	Intron	2
chr1:246 402 366	165	SINE (Alu)	SMYD3	Intron	2
chr1:246 429 027	317	SINE (Alu)	SMYD3	Intron	2
chr1:248 911 737	126	Retroposon (SVA)	PGBD2	Intron	2
chr1:433 445	76	LINE (L1)	LOC112268260	Intron	1
chr1:710 578	318	SINE (Alu)	OR4F16	Intron	2
chr2:1 199 165	306	SINE (Alu)	SNTG2	Intron	2
chr2:1 467 941	329	SINE (Alu)	TPO	Intron	2
chr2:2 295 538	173	LTR (ERV1)	MYT1L	Intron	1
chr2:11 213 564	311	SINE (Alu)	ROCK2	Intron	2
chr2:11 286 233	324	SINE (Alu)	ROCK2	Intron	2
chr2:15 379 414	312	SINE (Alu)	NBAS	Intron	2
chr2:15 541 819	152	Retroposon (SVA)	NBAS	Intron	2
chr2:21 573 937	297	SINE (Alu)	LOC105374320	Intron	2
chr2:24 255 675	122	SINE (Alu)	ITSN2	Intron	2
chr2:26 251 065	328	SINE (Alu)	HADHB	Intron	2
chr2:27 539 883	126	Retroposon (SVA)	C2orf16	Intron	2
chr2:31 336 815	310	SINE (Alu)	XDH	Intron	2
chr2:36 777 087	308	SINE (Alu)	VIT	Intron	2
chr2:39 079 154	61	LINE (L1)	SOS1	Intron	2
chr2:39 088 182	316	SINE (Alu)	SOS1	Intron	2
chr2:43 298 031	356	Retroposon (SVA)	THADA	Intron	2
chr2:44 588 991	259	Retroposon (SVA)	CAMKMT	Intron	1
chr2:44 588 991	536	Retroposon (SVA)	CAMKMT	Intron	2
chr2:44 598 695	316	SINE (Alu)	CAMKMT	Intron	2
chr2:45 969 044	332	SINE (Alu)	PRKCE	Intron	2
chr2:46 701 810	298	SINE (Alu)	LINC01118	Intron	2
chr2:47 092 140	323	SINE (Alu)	STPG4	Intron	2
chr2:50 375 490	328	SINE (Alu)	NRXN1	Intron	2
chr2:59 399 864	330	SINE (Alu)	LOC105374754	Intron	2
chr2:62 139 878	168	SINE (Alu)	COMMD1	Intron	1
chr2:63 552 086	325	SINE (Alu)	WDPCP	Intron	2
chr2:65 106 650	304	SINE (Alu)	RAB1A	Intron	2
chr2:65 600 689	1 341	Retroposon (SVA)	LINC02934	Intron	1
chr2:66 431 844	325	SINE (Alu)	MEIS1-AS3	Intron	2
chr2:69 517 524	317	SINE (Alu)	AAK1	Intron	2
chr2:71 479 155	181	SINE (Alu)	DYSF	Intron	2
chr2:73 898 351	317	SINE (Alu)	ACTG2	Intron	2
chr2:75 160 770	314	SINE (Alu)	LOC105374811	Intron	2
chr2:80 541 884	269	SINE (Alu)	CTNNA2	Intron	2
chr2:87 180 576	493	LINE (L1)	LOC102724642	Intron	2
chr2:104 078 052	73	LTR (ERV1)	LINC01965	Intron	2
chr2:105 836 109	316	SINE (Alu)	NCK2	Intron	2
chr2:111 283 808	329	SINE (Alu)	MIR4435-2HG	Intron	2
chr2:111 689 844	327	SINE (Alu)	MIR4435-2HG	Intron	2
chr2:111 780 870	73	LINE (L1)	ANAPC1	Promoter	1
chr2:111 780 870	73	LINE (L1)	ANAPC1	Intron	1
chr2:111 958 964	325	SINE (Alu)	MERTK	Intron	2
chr2:113 395 042	127	Retroposon (SVA)	LINC02966	Intron	2
chr2:113 464 500	316	SINE (Alu)	ZNG1B	Intron	2
chr2:117 871 796	101	LINE (L1)	LOC101929908	Intron	2
chr2:118 042 430	74	LINE (L1)	LOC102723413	Intron	2
chr2:119 843 893	642	Retroposon (SVA)	PTPN4	Intron	1
chr2:119 844 107	218	Retroposon (SVA)	PTPN4	Intron	1
chr2:122 573 068	317	SINE (Alu)	LOC105373595	Intron	2
chr2:122 762 574	312	SINE (Alu)	LOC105373595	Intron	2
chr2:127 881 317	326	SINE (Alu)	AMMECR1L	Intron	2
chr2:127 981 347	120	LTR (ERV1)	SAP130	Intron	2
chr2:131 765 910	259	SINE (Alu)	C2orf27A	Intron	2
chr2:133 158 922	325	SINE (Alu)	NCKAP5	Intron	2
chr2:140 776 485	328	SINE (Alu)	LRP1B	Intron	2
chr2:147 892 493	299	SINE (Alu)	ACVR2A	Intron	2
chr2:152 160 907	174	Retroposon (SVA)	STAM2	Intron	2
chr2:152 391 750	328	SINE (Alu)	FMNL2	Intron	2
chr2:153 896 067	331	SINE (Alu)	GALNT13	Intron	2
chr2:158 426 108	329	SINE (Alu)	CCDC148	Intron	2
chr2:159 251 110	156	SINE (Alu)	WDSUB1	Intron	2
chr2:159 519 808	158	SINE (Alu)	BAZ2B	Intron	2
chr2:165 037 524	82	LINE (L1)	LOC101929633	Intron	2
chr2:169 179 811	312	SINE (Alu)	LRP2	Intron	2
chr2:171 866 581	402	Retroposon (SVA)	SLC25A12	Intron	1
chr2:172 700 342	116	Retroposon (SVA)	RAPGEF4-AS1	Intron	2
chr2:174 087 490	2 687	Retroposon (SVA)	OLA1	Intron	2
chr2:174 871 203	318	SINE (Alu)	CHN1	Intron	2
chr2:177 453 984	333	SINE (Alu)	AGPS	Intron	2
chr2:177 486 724	340	SINE (Alu)	AGPS	Intron	2
chr2:188 298 290	302	SINE (Alu)	GULP1	Intron	2
chr2:190 430 797	94	Retroposon (SVA)	MFSD6	Intron	1
chr2:191 398 198	298	Retroposon (SVA)	MYO1B	Intron	2
chr2:191 975 312	330	SINE (Alu)	CAVIN2-AS1	Intron	2
chr2:197 898 723	311	SINE (Alu)	PLCL1	Intron	2
chr2:201 766 721	319	SINE (Alu)	ALS2	Intron	2
chr2:202 534 992	49	Retroposon (SVA)	BMPR2	Intron	1
chr2:207 607 676	320	SINE (Alu)	METTL21A	Intron	2
chr2:211 843 606	314	SINE (Alu)	ERBB4	Intron	2
chr2:212 060 586	330	SINE (Alu)	ERBB4	Intron	2
chr2:214 336 906	323	SINE (Alu)	SPAG16	Intron	2
chr2:214 835 361	413	Retroposon (SVA)	SNHG31	Intron	1
chr2:214 835 480	425	Retroposon (SVA)	SNHG31	Intron	1
chr2:215 683 694	326	SINE (Alu)	LOC102724861	Intron	2
chr2:217 316 033	304	SINE (Alu)	DIRC3-AS1	Intron	2
chr2:218 333 969	321	SINE (Alu)	PNKD	Intron	2
chr2:218 711 869	327	SINE (Alu)	TTLL4	Intron	2
chr2:222 896 866	77	Retroposon (SVA)	ACSL3	Intron	2
chr2:230 937 442	216	LTR (ERV1)	GPR55	Intron	2
chr2:232 246 907	127	LINE (L1)	DIS3L2	Intron	2
chr2:232 981 165	311	SINE (Alu)	NGEF	Intron	2
chr3:2 920 307	318	SINE (Alu)	CNTN4	Intron	2
chr3:4 163 465	314	SINE (Alu)	SUMF1	Intron	2
chr3:7 088 682	316	SINE (Alu)	GRM7	Intron	2
chr3:7 572 894	311	SINE (Alu)	GRM7	Intron	2
chr3:8 440 375	505	Retroposon (SVA)	LOC101927394	Intron	2
chr3:10 070 465	208	Retroposon (SVA)	FANCD2	Intron	2
chr3:11 487 519	522	Retroposon (SVA)	ATG7	Intron	2
chr3:12 095 537	325	SINE (Alu)	SYN2	Intron	2
chr3:14 041 654	332	SINE (Alu)	TPRXL	Intron	2
chr3:15 742 680	748	Retroposon (SVA)	ANKRD28	Intron	2
chr3:16 980 126	779	Retroposon (SVA)	PLCL2	Intron	2
chr3:24 946 366	2 952	LINE (L1)	RARB	Intron	2
chr3:25 249 858	71	LINE (L1)	RARB	Intron	2
chr3:25 348 403	318	SINE (Alu)	RARB	Intron	2
chr3:28 665 552	268	SINE (Alu)	ZCWPW2	Intron	2
chr3:29 473 341	159	LTR (ERV1)	ZCWPW2	Intron	1
chr3:31 839 889	327	SINE (Alu)	OSBPL10	Intron	2
chr3:34 317 734	6 091	LINE (L1)	LINC01811	Intron	2
chr3:42 856 917	326	SINE (Alu)	ACKR2	Intron	2
chr3:45 501 159	315	SINE (Alu)	LARS2	Intron	2
chr3:47 741 368	317	SINE (Alu)	SMARCC1	Intron	2
chr3:48 330 822	325	SINE (Alu)	SPINK8	Intron	2
chr3:49 913 639	325	SINE (Alu)	MON1A	Intron	2
chr3:50 025 591	268	SINE (Alu)	RBM6	Intron	2
chr3:50 084 927	174	Retroposon (SVA)	RBM6	Intron	1
chr3:50 311 874	492	Retroposon (SVA)	HYAL1	Intron	1
chr3:50 841 730	331	SINE (Alu)	DOCK3	Intron	2
chr3:51 249 632	77	Retroposon (SVA)	DOCK3	Intron	2
chr3:55 754 538	6 054	LINE (L1)	ERC2	Intron	2
chr3:56 584 248	79	Retroposon (SVA)	CCDC66	Intron	2
chr3:59 908 834	108	SINE (Alu)	FHIT	Intron	2
chr3:61 671 727	177	Retroposon (SVA)	PTPRG	Intron	2
chr3:61 671 741	279	Retroposon (SVA)	PTPRG	Intron	1
chr3:67 444 511	403	Retroposon (SVA)	SUCLG2	Intron	2
chr3:76 936 718	319	SINE (Alu)	ROBO2	Intron	2
chr3:78 809 652	88	LINE (L1)	ROBO1	Intron	2
chr3:86 058 273	331	SINE (Alu)	CADM2	Intron	2
chr3:89 257 671	322	SINE (Alu)	EPHA3	Intron	2
chr3:98 836 816	78	Retroposon (SVA)	DCBLD2	Intron	2
chr3:99 007 919	312	SINE (Alu)	LOC105374002	Intron	2
chr3:99 936 539	324	SINE (Alu)	CMSS1	Intron	2
chr3:111 268 619	321	SINE (Alu)	LOC105374038	Intron	2
chr3:111 507 514	339	SINE (Alu)	LOC105374039	Intron	2
chr3:112 205 623	49	LINE (L1)	SLC9C1	Intron	2
chr3:112 747 856	3 451	Retroposon (SVA)	LINC02042	Intron	2
chr3:123 407 764	310	SINE (Alu)	ADCY5	Intron	2
chr3:123 871 864	6 046	LINE (L1)	MYLK	Intron	2
chr3:124 849 824	322	SINE (Alu)	ITGB5	Intron	2
chr3:124 922 697	135	SINE (Alu)	MUC13	Intron	2
chr3:125 910 277	53	LTR (ERVL)	LOC102723696	Promoter	2
chr3:125 910 277	53	LTR (ERVL)	LINC02614	Intron	2
chr3:128 676 364	312	SINE (Alu)	RPN1	Intron	2
chr3:128 955 324	176	Retroposon (SVA)	CFAP92	Intron	2
chr3:130 219 573	318	SINE (Alu)	COL6A4P2	Intron	2
chr3:132 470 620	403	Retroposon (SVA)	DNAJC13	Intron	2
chr3:132 471 009	49	Retroposon (SVA)	DNAJC13	Intron	2
chr3:136 893 195	105	LINE (L1)	NCK1	Intron	2
chr3:142 741 180	314	SINE (Alu)	TRPC1	Intron	2
chr3:143 475 998	314	SINE (Alu)	SLC9A9	Intron	2
chr3:149 380 192	680	Retroposon (SVA)	TM4SF1-AS1	Intron	2
chr3:151 820 689	171	SINE (Alu)	AADAC	Intron	2
chr3:153 444 920	150	SINE (Alu)	LINC02877	Intron	2
chr3:158 245 130	337	SINE (Alu)	RSRC1	Intron	2
chr3:160 409 110	176	SINE (Alu)	SMC4	Intron	2
chr3:169 167 960	309	SINE (Alu)	MECOM	Intron	2
chr3:174 211 574	119	LTR (ERV1)	NLGN1	Intron	1
chr3:174 507 650	338	SINE (Alu)	NAALADL2	Intron	2
chr3:174 692 945	321	SINE (Alu)	NAALADL2	Intron	2
chr3:174 796 725	242	LINE (L1)	NAALADL2	Intron	2
chr3:178 393 249	329	SINE (Alu)	KCNMB2	Intron	2
chr3:179 121 484	67	Retroposon (SVA)	PIK3CA-DT	Intron	2
chr3:181 475 048	3 196	LINE (L1)	SOX2-OT	Intron	1
chr3:182 153 141	129	LINE (L1)	LOC105374243	Intron	1
chr3:183 870 209	302	SINE (Alu)	MAP6D1	Intron	2
chr3:187 240 159	328	SINE (Alu)	MASP1	Intron	2
chr3:189 165 421	321	SINE (Alu)	TPRG1	Intron	2
chr3:191 390 410	77	LTR (ERV1)	CCDC50	Intron	2
chr3:196 874 212	322	SINE (Alu)	SENP5	Intron	2
chr4:1 308 027	317	SINE (Alu)	MAEA	Intron	2
chr4:1 319 643	132	SINE (Alu)	MAEA	Intron	2
chr4:4 349 002	64	LTR (ERV1)	NSG1	Intron	1
chr4:4 357 815	132	LINE (L1)	NSG1	Intron	2
chr4:9 449 339	137	LINE (L1)	DEFB131A	Intron	2
chr4:13 761 218	145	Retroposon (SVA)	LOC107986182	Intron	2
chr4:14 847 401	5 443	LINE (L1)	LINC00504	Intron	2
chr4:14 955 276	114	LTR (ERVL)	CPEB2-DT	Intron	2
chr4:15 615 466	237	LTR (ERV1)	FBXL5	Intron	2
chr4:19 364 519	325	SINE (Alu)	LINC02438	Intron	2
chr4:25 808 835	135	SINE (Alu)	SEL1L3	Intron	1
chr4:25 808 835	135	SINE (Alu)	SEL1L3	Intron	1
chr4:37 509 272	84	Retroposon (SVA)	C4orf19	Intron	2
chr4:37 532 947	111	LINE (L1)	C4orf19	Intron	2
chr4:39 408 924	320	SINE (Alu)	KLB	Intron	2
chr4:42 086 022	315	SINE (Alu)	SLC30A9	Intron	2
chr4:46 378 053	292	Retroposon (SVA)	GABRA2	Intron	1
chr4:47 005 771	421	LINE (L1)	GABRB1	Intron	2
chr4:47 494 499	314	SINE (Alu)	ATP10D	Intron	2
chr4:47 542 099	333	SINE (Alu)	ATP10D	Intron	2
chr4:52 081 944	147	LINE (CR1)	SPATA18	Intron	2
chr4:52 737 160	170	SINE (Alu)	RASL11B	Intron	2
chr4:52 985 667	311	SINE (Alu)	SCFD2	Intron	2
chr4:53 549 475	318	SINE (Alu)	PDGFRA	Intron	2
chr4:54 154 800	160	LTR (ERV1)	PDGFRA	Intron	1
chr4:64 351 027	291	SINE (Alu)	TECRL	Intron	2
chr4:72 104 993	318	SINE (Alu)	NPFFR2	Intron	2
chr4:76 102 654	315	SINE (Alu)	ART3	Intron	2
chr4:81 708 982	317	SINE (Alu)	RASGEF1B	Intron	2
chr4:85 549 216	314	SINE (Alu)	ARHGAP24	Intron	2
chr4:85 583 924	72	LINE (L1)	ARHGAP24	Intron	2
chr4:87 308 500	143	SINE (Alu)	HSD17B13	Intron	2
chr4:87 713 074	320	SINE (Alu)	LOC105377324	Intron	2
chr4:98 046 002	54	LINE (L1)	STPG2	Intron	2
chr4:101 120 577	318	SINE (Alu)	PPP3CA	Intron	2
chr4:102 422 590	1 885	LINE (L1)	SLC39A8	Intron	2
chr4:104 545 400	318	SINE (Alu)	CXXC4-AS1	Intron	2
chr4:105 586 230	325	SINE (Alu)	ARHGEF38	Intron	2
chr4:114 628 762	317	SINE (Alu)	UGT8	Intron	2
chr4:117 844 098	1 731	LINE (L1)	LINC02264	Intron	2
chr4:118 853 560	317	SINE (Alu)	SYNPO2	Intron	2
chr4:132 196 673	315	SINE (Alu)	LOC105377428	Intron	2
chr4:134 001 190	306	SINE (Alu)	PABPC4L	Intron	2
chr4:134 209 110	327	SINE (Alu)	PABPC4L	Intron	2
chr4:136 885 359	139	SINE (Alu)	LINC02511	Intron	2
chr4:138 304 044	323	SINE (Alu)	LINC00498	Intron	2
chr4:140 017 765	150	SINE (Alu)	MAML3	Intron	2
chr4:144 784 654	134	LINE (L1)	GYPA	Intron	2
chr4:147 132 785	324	SINE (Alu)	LOC105377476	Intron	2
chr4:150 660 237	97	Retroposon (SVA)	LRBA	Intron	1
chr4:150 953 967	79	Retroposon (SVA)	LRBA	Intron	2
chr4:151 214 784	126	Retroposon (SVA)	SH3D19	Intron	2
chr4:153 979 895	318	SINE (Alu)	LOC101927947	Intron	2
chr4:154 213 487	74	LTR (ERVL)	LOC101927947	Intron	1
chr4:159 704 885	335	SINE (Alu)	LINC02233	Intron	2
chr4:161 435 495	310	SINE (Alu)	FSTL5	Intron	2
chr4:163 836 593	223	SINE (Alu)	MARCHF1	Intron	2
chr4:164 112 984	277	SINE (Alu)	MARCHF1	Intron	2
chr4:165 269 623	322	SINE (Alu)	KLHL2	Intron	2
chr4:169 667 679	314	SINE (Alu)	CLCN3	Intron	2
chr4:169 913 439	299	SINE (Alu)	LOC105377530	Intron	2
chr4:173 123 062	318	SINE (Alu)	GALNT7-DT	Intron	2
chr4:173 228 288	315	SINE (Alu)	GALNT7	Intron	2
chr4:174 290 427	311	SINE (Alu)	CEP44	Intron	2
chr4:181 070 771	337	SINE (Alu)	LINC00290	Intron	2
chr4:185 440 757	303	SINE (Alu)	C4orf47	Intron	2
chr4:185 460 991	289	SINE (Alu)	CCDC110	Intron	2
chr5:1 585 386	314	SINE (Alu)	SDHAP3	Intron	2
chr5:1 812 525	311	SINE (Alu)	NDUFS6	Intron	2
chr5:3 383 808	144	SINE (Alu)	LINC01019	Intron	2
chr5:5 279 667	313	SINE (Alu)	ADAMTS16	Intron	2
chr5:7 151 510	328	SINE (Alu)	LINC02196	Intron	2
chr5:10 634 867	317	SINE (Alu)	ANKRD33B	Intron	2
chr5:16 716 503	310	SINE (Alu)	MYO10	Intron	2
chr5:17 712 495	332	SINE (Alu)	LINC02223	Intron	2
chr5:20 471 978	279	LINE (L2)	CDH18	Intron	2
chr5:20 928 745	316	SINE (Alu)	LINC02241	Intron	2
chr5:32 762 455	328	SINE (Alu)	NPR3	Intron	2
chr5:32 974 396	1 064	LINE (L1)	LOC105374715	Intron	2
chr5:33 633 231	5 217	LINE (L1)	ADAMTS12	Intron	2
chr5:34 113 145	321	SINE (Alu)	C1QTNF3-AMACR	Intron	2
chr5:34 717 924	336	SINE (Alu)	RAI14	Intron	2
chr5:37 563 675	95	Retroposon (SVA)	WDR70	Intron	2
chr5:37 688 692	281	SINE (Alu)	WDR70	Intron	2
chr5:39 292 866	330	SINE (Alu)	C9	Intron	2
chr5:39 938 350	329	SINE (Alu)	LINC00603	Intron	2
chr5:42 625 750	334	SINE (Alu)	GHR	Intron	2
chr5:43 393 687	328	SINE (Alu)	CCL28	Intron	2
chr5:43 517 805	328	SINE (Alu)	C5orf34-AS1	Intron	2
chr5:54 087 760	65	SINE (Alu)	ARL15	Intron	2
chr5:55 433 459	334	SINE (Alu)	PLPP1	Intron	2
chr5:55 695 929	97	Retroposon (SVA)	SLC38A9	Intron	1
chr5:55 696 695	293	Retroposon (SVA)	SLC38A9	Intron	2
chr5:59 220 802	314	SINE (Alu)	PDE4D	Intron	2
chr5:62 339 522	310	SINE (Alu)	KIF2A	Intron	2
chr5:65 940 635	48	Retroposon (SVA)	ERBIN	Intron	1
chr5:68 967 632	651	LINE (L1)	LOC107984116	Intron	2
chr5:69 515 538	96	Retroposon (SVA)	OCLN	Intron	2
chr5:76 172 403	50	Retroposon (SVA)	SV2C	Intron	1
chr5:76 172 419	98	Retroposon (SVA)	SV2C	Intron	1
chr5:77 042 983	300	Retroposon (SVA)	AGGF1	Intron	1
chr5:77 395 389	313	SINE (Alu)	PDE8B	Intron	2
chr5:77 420 368	333	SINE (Alu)	PDE8B	Intron	2
chr5:82 140 183	973	Retroposon (SVA)	ATG10	Intron	2
chr5:82 140 204	211	Retroposon (SVA)	ATG10	Intron	2
chr5:87 076 864	295	SINE (Alu)	LOC101929380	Intron	2
chr5:87 301 462	245	SINE (Alu)	RASA1	Intron	2
chr5:90 154 950	6 074	LINE (L1)	LINC01339	Intron	2
chr5:90 702 006	152	SINE (Alu)	ADGRV1	Intron	2
chr5:104 128 705	324	SINE (Alu)	NIHCOLE	Intron	2
chr5:106 845 191	325	SINE (Alu)	LINC01950	Intron	2
chr5:111 450 624	189	SINE (Alu)	CAMK4	Intron	2
chr5:115 404 023	289	SINE (Alu)	LOC105379130	Intron	2
chr5:117 973 457	176	LTR (ERVL)	LINC02147	Intron	2
chr5:137 059 136	233	LINE (L2)	SPOCK1	Intron	2
chr5:137 190 010	288	SINE (Alu)	SPOCK1	Intron	2
chr5:142 379 076	311	SINE (Alu)	SPRY4-AS1	Intron	2
chr5:143 631 222	322	SINE (Alu)	LOC105378210	Intron	2
chr5:147 258 152	295	SINE (Alu)	STK32A	Intron	2
chr5:149 537 753	323	SINE (Alu)	CSNK1A1	Intron	2
chr5:152 743 990	315	SINE (Alu)	LINC01470	Intron	2
chr5:153 150 161	314	SINE (Alu)	LINC01470	Intron	2
chr5:155 906 881	2 479	LINE (L1)	SGCD	Intron	2
chr5:159 695 129	315	SINE (Alu)	LOC105377684	Intron	2
chr5:160 600 988	344	SINE (Alu)	ATP10B	Intron	2
chr5:162 530 740	5 454	LINE (L1)	LOC105377697	Intron	2
chr5:162 804 935	314	SINE (Alu)	LOC105377697	Intron	2
chr5:165 068 136	6 104	LINE (L1)	LINC03000	Intron	2
chr5:170 774 321	311	SINE (Alu)	GABRP	Intron	2
chr5:176 305 307	478	Retroposon (SVA)	SIMC1	Intron	2
chr5:176 305 349	130	Retroposon (SVA)	SIMC1	Intron	2
chr5:177 635 730	1 221	LINE (L1)	LOC202181	Intron	2
chr5:178 458 165	62	LINE (L1)	COL23A1	Intron	2
chr6:1 051 552	186	LTR (ERVL)	LINC01622	Intron	2
chr6:2 972 359	303	SINE (Alu)	SERPINB6	Promoter	2
chr6:5 348 526	320	SINE (Alu)	FARS2	Intron	2
chr6:8 110 692	328	SINE (Alu)	LOC105374910	Intron	2
chr6:19 346 204	318	SINE (Alu)	LOC107986575	Intron	2
chr6:20 168 888	314	SINE (Alu)	MBOAT1	Intron	2
chr6:26 994 391	117	SINE (Alu)	LINC00240	Promoter	2
chr6:26 994 391	117	SINE (Alu)	LINC00240	Intron	2
chr6:27 485 062	398	Retroposon (SVA)	LOC105375001	Intron	1
chr6:30 030 705	324	SINE (Alu)	POLR1HASP	Intron	2
chr6:31 021 332	81	LTR (ERV1)	MUC22	Intron	2
chr6:31 471 222	313	SINE (Alu)	HCP5	Intron	2
chr6:31 498 462	143	SINE (Alu)	MICB	Intron	2
chr6:32 518 332	292	SINE (Alu)	HLA-DRB5	Intron	2
chr6:32 520 783	314	SINE (Alu)	HLA-DRB5	Intron	2
chr6:32 523 879	311	SINE (Alu)	HLA-DRB5	Intron	2
chr6:32 525 041	326	SINE (Alu)	HLA-DRB5	Intron	2
chr6:32 528 619	313	SINE (Alu)	HLA-DRB5	Intron	2
chr6:32 529 427	297	SINE (Alu)	HLA-DRB5	Intron	2
chr6:32 667 886	1 001	LTR (ERVK)	HLA-DQB1	Intron	2
chr6:33 247 071	330	SINE (Alu)	LOC105375022	Promoter	2
chr6:34 405 663	329	SINE (Alu)	NUDT3	Intron	2
chr6:38 964 349	343	Retroposon (SVA)	DNAH8	Intron	1
chr6:42 702 567	327	SINE (Alu)	PRPH2	Intron	2
chr6:43 927 736	316	SINE (Alu)	LINC01512	Intron	2
chr6:44 146 440	980	Retroposon (SVA)	TMEM63B	Intron	2
chr6:44 319 523	606	LINE (L2)	SPATS1	Intron	2
chr6:45 292 724	323	SINE (Alu)	SUPT3H	Intron	2
chr6:46 109 870	329	SINE (Alu)	CLIC5	Intron	2
chr6:47 505 628	723	Retroposon (SVA)	CD2AP	Intron	2
chr6:49 487 167	104	LINE (L1)	CENPQ	Intron	2
chr6:51 982 170	1 143	Retroposon (SVA)	PKHD1	Intron	2
chr6:54 849 738	323	SINE (Alu)	FAM83B	Intron	2
chr6:64 126 336	191	SINE (Alu)	EYS	Intron	2
chr6:64 312 991	307	LINE (L1)	EYS	Intron	1
chr6:64 609 588	327	SINE (Alu)	EYS	Intron	2
chr6:65 454 072	308	SINE (Alu)	EYS	Intron	2
chr6:68 932 874	326	SINE (Alu)	ADGRB3	Intron	2
chr6:69 061 776	55	LINE (L1)	ADGRB3	Intron	2
chr6:69 122 017	75	Retroposon (SVA)	ADGRB3	Intron	2
chr6:72 089 797	6 036	LINE (L1)	RIMS1	Intron	2
chr6:73 289 794	141	SINE (Alu)	LOC122539212	Intron	2
chr6:73 601 480	273	Retroposon (SVA)	SLC17A5	Intron	2
chr6:73 795 113	320	SINE (Alu)	CD109	Intron	2
chr6:77 654 536	304	SINE (Alu)	MEI4	Intron	2
chr6:77 707 034	320	SINE (Alu)	MEI4	Intron	2
chr6:81 587 704	321	SINE (Alu)	LOC105377871	Intron	2
chr6:88 947 707	119	Retroposon (SVA)	RNGTT	Intron	2
chr6:88 947 973	84	Retroposon (SVA)	RNGTT	Intron	1
chr6:94 658 640	330	SINE (Alu)	LOC105377901	Intron	2
chr6:96 193 217	1 012	LINE (L1)	FUT9	Intron	2
chr6:96 497 728	68	LINE (L1)	UFL1-AS1	Intron	2
chr6:96 569 793	322	SINE (Alu)	FHL5	Intron	2
chr6:97 803 451	305	SINE (Alu)	LOC101927314	Intron	2
chr6:99 959 608	312	SINE (Alu)	MCHR2	Intron	2
chr6:101 724 118	329	SINE (Alu)	GRIK2	Intron	2
chr6:101 772 687	323	SINE (Alu)	GRIK2	Intron	2
chr6:101 835 882	1 269	LINE (L1)	GRIK2	Intron	2
chr6:107 078 566	137	SINE (Alu)	BEND3	Intron	2
chr6:109 047 036	671	Retroposon (SVA)	SESN1	Intron	2
chr6:109 781 772	289	SINE (Alu)	FIG4	Intron	2
chr6:110 305 536	310	SINE (Alu)	METTL24	Intron	2
chr6:110 404 690	328	SINE (Alu)	DDO	Intron	2
chr6:114 227 232	316	SINE (Alu)	HDAC2-AS2	Intron	2
chr6:114 921 893	75	LINE (L1)	LOC107986639	Intron	2
chr6:116 522 975	318	SINE (Alu)	TRAPPC3L	Intron	2
chr6:118 304 984	293	SINE (Alu)	SLC35F1	Intron	2
chr6:122 658 846	319	SINE (Alu)	PKIB	Intron	2
chr6:129 507 082	327	SINE (Alu)	LAMA2	Intron	2
chr6:130 293 637	283	SINE (Alu)	SAMD3	Intron	2
chr6:130 952 342	320	SINE (Alu)	EPB41L2	Intron	2
chr6:133 410 618	178	SINE (Alu)	EYA4	Intron	2
chr6:136 045 900	278	SINE (Alu)	PDE7B	Intron	2
chr6:136 151 778	70	SINE (Alu)	PDE7B	Intron	1
chr6:142 128 961	6 008	LINE (L1)	NMBR	Intron	2
chr6:143 630 226	311	SINE (Alu)	PHACTR2	Intron	2
chr6:147 874 651	2 642	LINE (L1)	SAMD5	Intron	2
chr6:148 481 014	283	SINE (Alu)	SASH1	Intron	2
chr6:149 574 167	135	SINE (Alu)	GINM1	Intron	2
chr6:149 786 212	53	Retroposon (SVA)	PCMT1	Intron	1
chr6:149 803 477	302	SINE (Alu)	PCMT1	Intron	2
chr6:153 312 233	316	SINE (Alu)	LOC105378066	Intron	2
chr6:158 349 077	262	Retroposon (SVA)	TULP4	Intron	2
chr6:160 915 407	317	SINE (Alu)	LOC105378093	Intron	2
chr6:161 760 223	4 000	LINE (L1)	PRKN	Intron	2
chr6:162 253 763	324	SINE (Alu)	PRKN	Intron	2
chr6:162 592 818	357	SINE (Alu)	PRKN	Intron	2
chr6:166 711 308	318	SINE (Alu)	RPS6KA2	Intron	2
chr6:166 784 176	522	LTR (ERVK)	RPS6KA2	Intron	1
chr6:168 588 126	324	SINE (Alu)	SMOC2	Intron	2
chr6:170 185 527	330	SINE (Alu)	LOC154449	Intron	2
chr7:2 268 722	126	Retroposon (SVA)	SNX8	Intron	2
chr7:2 424 360	337	SINE (Alu)	CHST12	Intron	2
chr7:8 495 321	317	SINE (Alu)	NXPH1	Intron	2
chr7:10 465 285	225	Retroposon (SVA)	MGC4859	Intron	1
chr7:15 423 549	134	LTR (ERVL)	AGMO	Intron	2
chr7:18 282 964	280	SINE (Alu)	HDAC9	Intron	2
chr7:19 478 703	4 744	LINE (L1)	LOC105375180	Intron	2
chr7:20 196 675	326	SINE (Alu)	MACC1	Intron	2
chr7:23 626 049	312	SINE (Alu)	CCDC126	Intron	2
chr7:23 637 669	97	Retroposon (SVA)	CCDC126	Intron	1
chr7:26 168 425	118	LINE (L1)	NFE2L3	Intron	2
chr7:29 145 540	327	SINE (Alu)	CHN2	Intron	2
chr7:31 761 098	80	SINE (MIR)	PDE1C	Intron	2
chr7:36 212 541	319	SINE (Alu)	EEPD1	Intron	2
chr7:37 797 033	310	SINE (Alu)	GPR141	Intron	2
chr7:45 749 603	323	SINE (Alu)	SEPTIN7P2	Intron	2
chr7:47 511 477	334	SINE (Alu)	TNS3	Intron	2
chr7:56 021 026	324	SINE (Alu)	PSPH	Intron	2
chr7:56 021 637	59	SINE (Alu)	PSPH	Intron	2
chr7:64 809 487	125	Retroposon (SVA)	ZNF138	Intron	2
chr7:69 293 439	332	SINE (Alu)	LOC105375345	Intron	2
chr7:74 809 479	193	SINE (Alu)	GTF2IRD2	Intron	2
chr7:80 793 843	330	SINE (Alu)	SEMA3C	Intron	2
chr7:82 372 562	326	SINE (Alu)	CACNA2D1	Intron	2
chr7:82 801 191	314	SINE (Alu)	PCLO	Intron	2
chr7:83 460 624	62	LTR (ERV1)	SEMA3E	Intron	2
chr7:84 299 804	69	SINE (Alu)	SEMA3A	Intron	2
chr7:89 215 579	340	SINE (Alu)	ZNF804B	Intron	2
chr7:95 149 736	327	SINE (Alu)	PPP1R9A	Intron	2
chr7:99 240 044	331	SINE (Alu)	MYH16	Intron	2
chr7:100 948 850	52	SINE (Alu)	MUC3A	Promoter	2
chr7:100 973 079	331	SINE (Alu)	MUC12	Intron	2
chr7:102 549 902	84	SINE (Alu)	POLR2J3-UPK3BL2	Intron	1
chr7:105 255 124	323	SINE (Alu)	SRPK2	Intron	2
chr7:105 825 613	215	SINE (Alu)	ATXN7L1	Intron	2
chr7:108 188 803	6 055	LINE (L1)	NRCAM	Intron	2
chr7:110 844 692	96	LINE (L1)	IMMP2L	Intron	2
chr7:117 121 885	269	SINE (Alu)	ST7	Intron	2
chr7:117 716 192	319	SINE (Alu)	CTTNBP2	Intron	2
chr7:118 443 246	316	SINE (Alu)	ANKRD7	Intron	2
chr7:123 554 487	308	SINE (Alu)	NDUFA5	Intron	2
chr7:128 577 275	307	Retroposon (SVA)	LINC01000	Intron	2
chr7:129 476 166	90	Retroposon (SVA)	STRIP2	Intron	1
chr7:130 591 390	627	Retroposon (SVA)	COPG2	Intron	2
chr7:131 224 137	144	SINE (Alu)	MKLN1	Intron	2
chr7:132 166 350	328	SINE (Alu)	PLXNA4	Intron	2
chr7:133 896 830	176	SINE (Alu)	EXOC4	Intron	2
chr7:139 101 477	378	Retroposon (SVA)	ZC3HAV1	Intron	2
chr7:140 637 145	316	SINE (Alu)	DENND2A	Intron	2
chr7:141 313 777	318	SINE (Alu)	TMEM178B	Intron	2
chr7:154 062 983	236	LTR (ERV1)	DPP6	Intron	2
chr7:154 268 949	311	SINE (Alu)	DPP6	Intron	2
chr7:154 590 554	328	SINE (Alu)	DPP6	Intron	2
chr7:155 367 108	77	Retroposon (SVA)	BLACE	Intron	2
chr7:157 656 078	314	SINE (Alu)	PTPRN2	Intron	2
chr7:158 810 996	126	SINE (Alu)	ESYT2	Intron	2
chr7:902 456	175	SINE (Alu)	ADAP1	Intron	2
chr8:3 769 438	328	SINE (Alu)	CSMD1	Intron	2
chr8:4 595 369	94	LINE (L1)	CSMD1	Intron	2
chr8:6 187 437	317	SINE (Alu)	LOC105377797	Intron	2
chr8:6 196 794	91	LINE (L1)	LOC105377797	Intron	2
chr8:9 062 603	321	SINE (Alu)	ERI1	Intron	2
chr8:9 606 137	312	SINE (Alu)	TNKS	Intron	2
chr8:14 117 908	321	SINE (Alu)	SGCZ	Intron	2
chr8:15 690 996	323	SINE (Alu)	TUSC3	Intron	2
chr8:16 245 296	275	SINE (Alu)	MSR1	Intron	2
chr8:16 674 061	848	LINE (L1)	LOC101929028	Intron	2
chr8:22 625 878	328	SINE (Alu)	BIN3	Intron	2
chr8:22 922 448	349	SINE (Alu)	PEBP4	Intron	2
chr8:25 315 133	299	SINE (Alu)	DOCK5	Intron	2
chr8:28 684 943	129	LINE (L1)	EXTL3	Intron	2
chr8:32 502 454	314	SINE (Alu)	NRG1	Intron	2
chr8:32 514 935	197	LINE (L1)	NRG1	Intron	2
chr8:33 904 132	284	SINE (Alu)	LOC105379364	Intron	2
chr8:39 006 540	313	SINE (Alu)	ADAM9	Promoter	2
chr8:39 006 540	313	SINE (Alu)	ADAM9	Intron	2
chr8:42 182 377	309	SINE (Alu)	PLAT	Intron	2
chr8:43 179 659	97	Retroposon (SVA)	HGSNAT	Promoter	2
chr8:43 179 659	97	Retroposon (SVA)	HGSNAT	Intron	2
chr8:60 614 219	321	SINE (Alu)	RAB2A	Intron	2
chr8:62 431 909	322	SINE (Alu)	NKAIN3	Intron	2
chr8:64 686 416	77	Retroposon (SVA)	CYP7B1	Intron	2
chr8:65 662 664	73	Retroposon (SVA)	MTFR1	Intron	2
chr8:66 469 644	229	LINE (L1)	VXN	Intron	2
chr8:68 069 556	328	SINE (Alu)	PREX2	Intron	2
chr8:71 293 804	324	SINE (Alu)	EYA1	Intron	2
chr8:74 150 320	318	SINE (Alu)	LOC105375903	Intron	2
chr8:74 463 097	317	SINE (Alu)	GDAP1	Intron	2
chr8:79 838 639	319	SINE (Alu)	LOC101927040	Intron	2
chr8:84 525 028	307	SINE (Alu)	RALYL	Intron	2
chr8:86 067 390	320	SINE (Alu)	PSKH2	Intron	2
chr8:86 964 152	73	LTR (ERV1)	CNBD1	Intron	2
chr8:90 686 770	520	LTR (ERV1)	LOC105375633	Intron	2
chr8:95 645 037	325	SINE (Alu)	CFAP418-AS1	Intron	2
chr8:109 089 362	320	SINE (Alu)	TRHR	Intron	2
chr8:109 337 070	299	SINE (Alu)	ENY2	Intron	2
chr8:119 788 537	232	SINE (Alu)	TAF2	Intron	2
chr8:121 651 129	300	SINE (Alu)	HAS2-AS1	Intron	2
chr8:121 718 766	321	SINE (Alu)	HAS2-AS1	Intron	2
chr8:124 877 714	282	SINE (Alu)	LINC00964	Intron	2
chr8:125 011 860	338	SINE (Alu)	SQLE	Intron	2
chr8:125 327 683	354	SINE (Alu)	NSMCE2	Intron	2
chr8:126 853 220	291	SINE (Alu)	LOC105375751	Intron	2
chr8:127 025 866	323	SINE (Alu)	LOC105375751	Intron	2
chr8:127 316 914	204	Retroposon (SVA)	PCAT1	Intron	2
chr8:128 825 943	177	Retroposon (SVA)	LINC00976	Intron	2
chr8:129 258 242	278	SINE (Alu)	CCDC26	Intron	2
chr8:129 699 948	330	SINE (Alu)	GSDMC	Intron	2
chr8:131 930 463	323	SINE (Alu)	EFR3A	Intron	2
chr8:134 867 666	112	LINE (CR1)	LOC101927845	Intron	2
chr8:138 313 721	312	SINE (Alu)	FAM135B	Intron	2
chr8:140 037 950	330	SINE (Alu)	TRAPPC9	Intron	2
chr8:140 950 042	69	LTR (ERV1)	PTK2	Intron	2
chr8:144 347 172	291	SINE (Alu)	SLC52A2	Intron	2
chr9:7 852 522	327	SINE (Alu)	DMAC1	Intron	2
chr9:10 461 250	314	SINE (Alu)	PTPRD	Intron	2
chr9:15 234 394	125	Retroposon (SVA)	TTC39B	Intron	2
chr9:17 062 588	337	SINE (Alu)	LOC105375983	Intron	2
chr9:19 365 709	95	SINE (Alu)	DENND4C	Intron	2
chr9:28 195 374	312	SINE (Alu)	LINGO2	Intron	2
chr9:28 960 602	322	SINE (Alu)	LINGO2	Intron	2
chr9:32 463 887	169	LINE (L1)	RIGI	Intron	2
chr9:33 130 551	2 045	Retroposon (SVA)	B4GALT1	Intron	2
chr9:34 115 379	299	SINE (Alu)	DCAF12	Intron	2
chr9:36 645 303	309	SINE (Alu)	MELK	Intron	2
chr9:37 190 303	317	SINE (Alu)	ZCCHC7	Intron	2
chr9:37 596 333	324	SINE (Alu)	SHB	Intron	2
chr9:41 047 836	788	LINE (L1)	FRG1HP	Intron	2
chr9:63 838 317	308	SINE (Alu)	FRG1JP	Intron	2
chr9:67 083 505	299	SINE (Alu)	CNTNAP3P2	Intron	2
chr9:70 801 716	315	SINE (Alu)	TRPM3	Intron	2
chr9:70 974 307	132	SINE (Alu)	TRPM3	Intron	2
chr9:72 616 616	313	SINE (Alu)	TMC1	Intron	2
chr9:72 800 719	333	SINE (Alu)	TMC1	Intron	2
chr9:72 806 377	97	Retroposon (SVA)	TMC1	Intron	2
chr9:76 063 871	455	Retroposon (SVA)	PCSK5	Intron	2
chr9:76 337 135	325	SINE (Alu)	PCSK5	Intron	2
chr9:90 432 247	306	SINE (Alu)	LINC01508	Intron	2
chr9:94 147 772	315	SINE (Alu)	LOC107987099	Promoter	2
chr9:94 497 740	318	SINE (Alu)	LOC107987100	Intron	2
chr9:104 984 603	727	Retroposon (SVA)	CT70	Intron	2
chr9:110 564 791	330	SINE (Alu)	SVEP1	Intron	2
chr9:110 729 242	325	SINE (Alu)	MUSK	Intron	2
chr9:112 514 852	225	Retroposon (SVA)	KIAA1958	Intron	1
chr9:116 840 552	349	Retroposon (SVA)	LOC105376239	Intron	2
chr9:116 840 602	562	Retroposon (SVA)	LOC105376239	Intron	2
chr9:121 971 181	299	Retroposon (SVA)	TTLL11	Intron	1
chr9:123 802 496	79	LINE (L2)	DENND1A	Intron	2
chr9:125 458 887	432	Retroposon (SVA)	MAPKAP1	Intron	2
chr9:125 577 664	257	Retroposon (SVA)	MAPKAP1	Intron	2
chr9:125 780 971	116	Retroposon (SVA)	PBX3	Intron	2
chr9:129 442 922	966	LTR (ERVK)	LOC105376291	Intron	2
chr9:131 414 408	3 392	Retroposon (SVA)	PRRC2B	Intron	2
chr9:136 074 438	479	SINE (Alu)	NACC2	Intron	2
chr9:262 447	323	SINE (Alu)	DOCK8	Intron	2
chr9:848 895	334	SINE (Alu)	DMRT1	Intron	2
chr10:6 206 499	76	Retroposon (SVA)	PFKFB3	Intron	2
chr10:6 206 834	110	Retroposon (SVA)	PFKFB3	Intron	2
chr10:6 229 148	313	SINE (Alu)	PFKFB3	Intron	2
chr10:9 862 428	325	SINE (Alu)	LINC02663	Intron	2
chr10:11 942 951	322	SINE (Alu)	UPF2	Intron	2
chr10:12 625 627	324	SINE (Alu)	CAMK1D	Intron	2
chr10:14 442 801	327	SINE (Alu)	FRMD4A	Intron	2
chr10:21 057 588	49	SINE (Alu)	NEBL	Intron	2
chr10:24 656 758	304	Retroposon (SVA)	ARHGAP21	Intron	1
chr10:25 198 984	334	SINE (Alu)	GPR158	Intron	2
chr10:25 418 756	6 044	LINE (L1)	GPR158	Intron	2
chr10:25 668 385	326	SINE (Alu)	LINC00836	Intron	2
chr10:25 937 005	320	SINE (Alu)	MYO3A	Intron	2
chr10:26 564 035	318	SINE (Alu)	APBB1IP	Intron	2
chr10:26 587 715	268	SINE (Alu)	LINC03028	Intron	1
chr10:26 672 154	180	SINE (Alu)	SELENOOLP	Intron	2
chr10:28 813 597	315	SINE (Alu)	LINC01517	Intron	2
chr10:28 816 354	312	SINE (Alu)	LINC01517	Intron	2
chr10:29 729 670	173	SINE (Alu)	SVIL	Intron	2
chr10:32 647 469	54	SINE (Alu)	CCDC7	Intron	2
chr10:34 256 742	315	SINE (Alu)	PARD3	Intron	2
chr10:42 754 636	324	SINE (Alu)	LOC283028	Promoter	2
chr10:46 647 422	322	SINE (Alu)	SHLD2P1	Intron	2
chr10:46 876 544	302	SINE (Alu)	FRMPD2B	Promoter	2
chr10:46 876 544	302	SINE (Alu)	FRMPD2B	Intron	2
chr10:50 479 035	342	SINE (Alu)	SGMS1	Intron	2
chr10:52 707 167	322	SINE (Alu)	LNCAROD	Intron	2
chr10:54 167 771	82	LTR (ERV1)	PCDH15	Intron	2
chr10:54 223 519	325	SINE (Alu)	PCDH15	Intron	2
chr10:55 002 597	62	LTR (ERV1)	PCDH15	Intron	2
chr10:58 757 476	317	SINE (Alu)	BICC1	Intron	2
chr10:59 225 142	323	SINE (Alu)	PHYHIPL	Intron	2
chr10:60 365 085	294	SINE (Alu)	ANK3	Intron	2
chr10:65 671 223	326	SINE (Alu)	LINC01515	Intron	2
chr10:66 576 999	327	SINE (Alu)	CTNNA3	Intron	2
chr10:68 235 132	326	SINE (Alu)	LINC02640	Intron	2
chr10:68 524 360	314	SINE (Alu)	SLC25A16	Intron	2
chr10:69 850 406	317	SINE (Alu)	COL13A1	Intron	2
chr10:70 407 971	370	Retroposon (SVA)	EIF4EBP2	Intron	2
chr10:70 845 655	316	SINE (Alu)	SGPL1	Intron	2
chr10:71 433 771	327	SINE (Alu)	CDH23	Intron	2
chr10:74 470 576	142	LINE (L1)	ADK	Intron	2
chr10:75 333 727	146	Retroposon (SVA)	ZNF503-AS1	Intron	1
chr10:78 310 298	186	SINE (Alu)	LOC105378375	Intron	2
chr10:80 543 915	208	LTR (ERV1)	SH2D4B	Intron	1
chr10:84 223 486	321	SINE (Alu)	LRIT2	Intron	2
chr10:86 016 234	309	SINE (Alu)	GRID1	Intron	2
chr10:87 689 317	221	SINE (Alu)	PAPSS2	Intron	1
chr10:89 350 312	110	SINE (Alu)	IFIT3	Intron	2
chr10:90 087 413	55	LTR (ERV1)	LINC01374	Intron	2
chr10:90 455 298	313	SINE (Alu)	LINC02653	Intron	2
chr10:90 467 738	317	SINE (Alu)	LINC02653	Intron	2
chr10:92 975 822	224	Retroposon (SVA)	EXOC6	Intron	2
chr10:94 824 978	395	LINE (L1)	CYP2C19	Intron	2
chr10:95 908 766	315	SINE (Alu)	ENTPD1-AS1	Promoter	2
chr10:95 908 766	315	SINE (Alu)	CC2D2B	Intron	2
chr10:99 838 925	581	Retroposon (SVA)	ABCC2	Intron	1
chr10:101 886 348	303	SINE (Alu)	ARMH3	Intron	2
chr10:101 975 999	322	SINE (Alu)	ARMH3	Intron	2
chr10:102 036 205	141	Retroposon (SVA)	ARMH3	Intron	2
chr10:104 057 438	192	SINE (Alu)	COL17A1	Intron	2
chr10:105 095 699	312	SINE (Alu)	SORCS3	Intron	2
chr10:110 251 006	310	SINE (Alu)	MXI1	Intron	2
chr10:112 314 098	311	SINE (Alu)	GUCY2GP	Intron	2
chr10:122 804 291	333	SINE (Alu)	DMBT1L1	Intron	2
chr10:122 976 472	318	SINE (Alu)	PSTK	Intron	2
chr10:127 392 027	314	SINE (Alu)	DOCK1	Intron	2
chr10:130 096 568	97	LINE (L1)	C10orf143	Intron	2
chr10:130 347 306	321	SINE (Alu)	LINC02646	Intron	2
chr10:133 217 518	117	SINE (Alu)	KNDC1	Intron	2
chr11:1 576 988	66	SINE (Alu)	KRTAP5-AS1	Intron	2
chr11:2 749 569	123	SINE (Alu)	KCNQ1	Intron	2
chr11:4 729 983	332	SINE (Alu)	MMP26	Intron	2
chr11:4 886 716	232	SINE (Alu)	MMP26	Intron	2
chr11:5 863 905	318	SINE (Alu)	TRIM5	Intron	2
chr11:7 331 217	328	SINE (Alu)	SYT9	Intron	2
chr11:7 591 452	321	SINE (Alu)	PPFIBP2	Intron	2
chr11:8 424 808	318	SINE (Alu)	STK33	Intron	2
chr11:8 865 752	319	SINE (Alu)	DENND2B	Intron	2
chr11:13 791 469	335	SINE (Alu)	LINC02548	Intron	2
chr11:15 998 427	322	SINE (Alu)	SOX6	Intron	2
chr11:16 888 339	142	Retroposon (SVA)	PLEKHA7	Intron	1
chr11:19 860 077	224	Retroposon (SVA)	NAV2	Intron	2
chr11:22 241 253	123	LINE (L1)	ANO5	Intron	2
chr11:22 243 730	1 119	LINE (L1)	ANO5	Intron	1
chr11:26 271 711	299	SINE (Alu)	ANO3	Intron	2
chr11:33 653 937	317	SINE (Alu)	KIAA1549L	Intron	2
chr11:41 145 483	312	LTR (ERV1)	LRRC4C	Intron	2
chr11:45 738 485	275	Retroposon (SVA)	LOC100507384	Intron	2
chr11:47 299 622	52	SINE (Alu)	MADD	Intron	2
chr11:47 785 087	291	SINE (Alu)	NUP160	Intron	2
chr11:49 634 261	300	SINE (Alu)	GRM5P1	Intron	2
chr11:58 404 363	1 494	LINE (L1)	OR5B3	Intron	2
chr11:59 645 320	382	Retroposon (SVA)	PATL1	Intron	2
chr11:63 893 356	258	LINE (L1)	MARK2	Intron	2
chr11:64 161 757	135	SINE (Alu)	MACROD1	Intron	2
chr11:65 239 594	127	Retroposon (SVA)	SLC22A20P	Intron	1
chr11:67 222 629	532	Retroposon (SVA)	KDM2A	Intron	2
chr11:74 270 503	262	SINE (Alu)	P4HA3	Promoter	2
chr11:74 270 503	262	SINE (Alu)	P4HA3	Intron	2
chr11:74 353 855	75	Retroposon (SVA)	PGM2L1	Intron	2
chr11:74 556 415	56	SINE (Alu)	POLD3	Intron	2
chr11:74 656 964	91	LINE (L1)	POLD3	Intron	2
chr11:76 619 299	602	Retroposon (SVA)	LINC02757	Intron	2
chr11:77 098 714	222	Retroposon (SVA)	CAPN5	Intron	2
chr11:77 279 524	313	SINE (Alu)	GDPD4	Intron	2
chr11:78 879 312	712	Retroposon (SVA)	TENM4	Intron	2
chr11:82 182 179	92	Retroposon (SVA)	MIR4300HG	Intron	2
chr11:83 018 315	60	LINE (L1)	RAB30	Intron	2
chr11:87 154 955	166	LINE (L1)	TMEM135	Intron	1
chr11:89 824 135	56	LINE (L1)	LOC642414	Intron	1
chr11:90 267 331	185	LINE (L1)	DISC1FP1	Intron	2
chr11:92 875 310	312	SINE (Alu)	FAT3	Intron	2
chr11:96 289 863	337	SINE (Alu)	MAML2	Intron	2
chr11:99 858 677	325	SINE (Alu)	CNTN5	Intron	2
chr11:100 910 650	323	SINE (Alu)	ARHGAP42	Intron	2
chr11:102 477 579	220	SINE (Alu)	LOC102723838	Intron	2
chr11:103 330 537	322	SINE (Alu)	DYNC2H1	Intron	2
chr11:103 921 859	326	SINE (Alu)	PDGFD	Intron	2
chr11:104 915 862	321	SINE (Alu)	CASP4LP	Intron	2
chr11:117 251 250	86	Retroposon (SVA)	RNF214	Intron	2
chr11:119 253 538	265	Retroposon (SVA)	CBL	Intron	2
chr11:127 033 276	330	SINE (Alu)	LOC101929473	Intron	2
chr11:130 178 391	127	LTR (ERVL)	ST14	Intron	2
chr11:134 435 746	316	LINE (L1)	B3GAT1-DT	Promoter	2
chr11:134 435 746	316	LINE (L1)	B3GAT1-DT	Intron	2
chr11:428 013	320	SINE (Alu)	ANO9	Intron	2
chr11:696 721	134	SINE (Alu)	EPS8L2	Intron	2
chr12:1 543 322	423	SINE (Alu)	WNT5B	Intron	2
chr12:4 661 707	310	SINE (Alu)	NDUFA9	Intron	2
chr12:5 660 425	298	SINE (Alu)	ANO2	Intron	2
chr12:8 184 242	413	Retroposon (SVA)	ZNF705A	Intron	2
chr12:9 349 116	79	Retroposon (SVA)	LINC02367	Intron	2
chr12:10 081 587	318	SINE (Alu)	CLEC1A	Intron	2
chr12:10 808 238	287	SINE (Alu)	TAS2R8	Promoter	2
chr12:11 026 423	307	SINE (Alu)	PRH1-PRR4	Intron	2
chr12:11 092 597	132	LTR (ERV1)	TAS2R43	Promoter	1
chr12:11 092 597	132	LTR (ERV1)	PRH1-PRR4	Intron	1
chr12:12 780 744	1 779	LINE (L1)	APOLD1	Intron	2
chr12:18 215 860	319	SINE (Alu)	RERGL	Intron	2
chr12:19 653 272	288	SINE (Alu)	AEBP2	Intron	2
chr12:20 853 921	319	SINE (Alu)	SLCO1B3	Intron	2
chr12:21 933 008	332	SINE (Alu)	ABCC9	Intron	2
chr12:24 298 781	318	SINE (Alu)	SOX5	Intron	2
chr12:24 365 676	322	SINE (Alu)	SOX5	Intron	2
chr12:27 711 861	314	SINE (Alu)	MRPS35	Intron	2
chr12:28 285 662	314	SINE (Alu)	CCDC91	Intron	2
chr12:29 670 962	312	SINE (Alu)	TMTC1	Intron	2
chr12:31 650 024	315	SINE (Alu)	ETFBKMT	Intron	2
chr12:31 923 477	315	SINE (Alu)	LINC02422	Intron	2
chr12:32 205 714	332	SINE (Alu)	BICD1	Intron	2
chr12:32 270 114	317	SINE (Alu)	BICD1	Intron	2
chr12:40 438 982	305	SINE (Alu)	MUC19	Intron	2
chr12:43 524 175	1 073	LINE (L1)	ADAMTS20	Intron	2
chr12:47 918 691	320	SINE (Alu)	VDR	Intron	2
chr12:48 842 516	125	Retroposon (SVA)	DDX23	Intron	1
chr12:48 842 675	127	Retroposon (SVA)	DDX23	Intron	1
chr12:50 604 178	3 150	Retroposon (SVA)	DIP2B	Intron	2
chr12:50 776 325	307	SINE (Alu)	ATF1	Intron	2
chr12:56 075 811	182	Retroposon (SVA)	ERBB3	Promoter	1
chr12:56 558 296	304	SINE (Alu)	RBMS2	Intron	2
chr12:64 029 802	87	SINE (Alu)	SRGAP1	Intron	2
chr12:64 204 038	84	LINE (L1)	KICS2	Intron	2
chr12:64 783 846	187	SINE (Alu)	TBC1D30	Intron	2
chr12:66 617 787	329	SINE (Alu)	GRIP1	Intron	2
chr12:69 583 782	343	SINE (Alu)	MIR3913-2	Promoter	2
chr12:69 728 845	326	SINE (Alu)	LOC101928002	Intron	2
chr12:70 086 432	62	LTR (ERV1)	PRANCR	Intron	1
chr12:71 131 684	320	SINE (Alu)	TSPAN8	Intron	2
chr12:78 003 152	327	SINE (Alu)	NAV3	Intron	2
chr12:85 112 496	780	LINE (L1)	LRRIQ1	Intron	2
chr12:86 811 026	109	LINE (L1)	MGAT4C	Intron	2
chr12:95 907 463	50	Retroposon (SVA)	CCDC38	Intron	2
chr12:99 387 859	178	SINE (Alu)	ANKS1B	Intron	2
chr12:100 294 427	196	Retroposon (SVA)	SCYL2	Intron	1
chr12:101 484 137	2 731	Retroposon (SVA)	SPIC	Intron	2
chr12:104 923 205	186	SINE (Alu)	SLC41A2	Intron	2
chr12:116 733 345	170	SINE (Alu)	SPRING1	Intron	2
chr12:117 749 119	3 757	LINE (L1)	KSR2	Intron	2
chr12:122 237 736	78	SINE (Alu)	VPS33A	Intron	2
chr12:124 073 310	308	SINE (Alu)	ZNF664	Intron	2
chr12:126 318 381	6 044	LINE (L1)	LINC02350	Intron	2
chr12:126 405 316	330	SINE (Alu)	LINC02350	Intron	2
chr12:131 926 421	80	Retroposon (SVA)	LOC107984455	Intron	1
chr12:132 789 701	56	SINE (Alu)	GOLGA3	Intron	1
chr12:132 868 562	181	SINE (Alu)	CHFR	Intron	1
chr12:132 892 413	238	SINE (Alu)	CHFR	Intron	2
chr12:132 935 638	124	SINE (Alu)	CHFR	Intron	2
chr12:132 939 900	260	LTR (ERV1)	CHFR	Intron	1
chr12:676 192	133	SINE (Alu)	LINC02455	Intron	2
chr12:947 963	322	SINE (Alu)	RAD52	Intron	2
chr13:18 849 237	324	SINE (Alu)	ANKRD20A9P	Intron	2
chr13:21 320 624	287	SINE (Alu)	MIPEPP3	Intron	2
chr13:21 448 212	145	Retroposon (SVA)	ZDHHC20	Intron	2
chr13:21 448 382	77	Retroposon (SVA)	ZDHHC20	Intron	2
chr13:24 046 535	340	SINE (Alu)	SPATA13	Intron	2
chr13:24 937 860	322	SINE (Alu)	TPTE2P1	Intron	2
chr13:25 878 480	142	LTR (ERV1)	ATP8A2	Intron	2
chr13:28 964 736	319	SINE (Alu)	MTUS2	Intron	2
chr13:28 990 621	67	LTR (ERV1)	MTUS2	Intron	2
chr13:34 541 017	96	Retroposon (SVA)	LINC02343	Intron	2
chr13:38 878 388	315	SINE (Alu)	FREM2	Intron	2
chr13:40 955 542	97	Retroposon (SVA)	ELF1	Intron	2
chr13:41 881 714	126	Retroposon (SVA)	VWA8	Intron	2
chr13:42 197 253	391	LINE (L1)	DGKH	Intron	2
chr13:42 365 942	336	SINE (Alu)	LINC02341	Intron	1
chr13:42 476 441	73	Retroposon (SVA)	LINC02341	Intron	1
chr13:43 416 183	444	Retroposon (SVA)	ENOX1	Intron	2
chr13:45 485 419	767	Retroposon (SVA)	COG3	Intron	1
chr13:46 073 596	309	SINE (Alu)	CPB2-AS1	Intron	2
chr13:46 470 173	298	SINE (Alu)	LINC01198	Promoter	2
chr13:46 470 173	298	SINE (Alu)	LINC01198	Intron	2
chr13:50 337 937	286	SINE (Alu)	DLEU1	Intron	2
chr13:60 037 032	130	LINE (L1)	DIAPH3-AS1	Intron	2
chr13:60 715 401	389	LINE (L1)	LINC00378	Intron	2
chr13:60 758 288	311	SINE (Alu)	LINC00378	Intron	2
chr13:60 888 199	6 032	LINE (L1)	LINC00378	Intron	2
chr13:67 329 321	238	SINE (Alu)	LINC00364	Intron	2
chr13:78 010 527	313	SINE (Alu)	OBI1-AS1	Intron	2
chr13:78 077 535	314	SINE (Alu)	OBI1-AS1	Intron	2
chr13:78 185 608	327	SINE (Alu)	OBI1-AS1	Intron	2
chr13:80 948 934	328	SINE (Alu)	LOC105370278	Intron	2
chr13:84 899 424	221	SINE (Alu)	LOC105370290	Intron	2
chr13:89 749 575	326	SINE (Alu)	LOC107984621	Intron	2
chr13:91 609 018	322	SINE (Alu)	GPC5	Intron	2
chr13:91 861 711	295	SINE (Alu)	GPC5	Intron	2
chr13:92 172 972	321	SINE (Alu)	GPC5	Intron	2
chr13:92 538 791	212	LINE (L1)	GPC5	Intron	2
chr13:92 587 527	320	SINE (Alu)	GPC5	Intron	2
chr13:98 151 042	326	SINE (Alu)	FARP1	Intron	2
chr13:100 883 706	315	SINE (Alu)	NALCN-AS1	Intron	2
chr13:101 737 015	334	SINE (Alu)	FGF14	Intron	2
chr13:110 424 450	318	SINE (Alu)	COL4A2	Promoter	2
chr13:110 424 450	318	SINE (Alu)	COL4A2	Intron	2
chr13:110 674 419	325	SINE (Alu)	CARS2	Intron	2
chr13:110 959 391	247	SINE (Alu)	LOC105370364	Intron	2
chr13:112 678 489	81	Retroposon (SVA)	ATP11AUN	Intron	2
chr13:112 866 638	313	SINE (Alu)	ATP11A	Intron	2
chr13:112 937 994	217	LTR (ERV1)	MCF2L	Intron	1
chr13:113 357 053	132	SINE (Alu)	GRTP1-AS1	Intron	2
chr13:113 961 471	316	SINE (Alu)	C13orf46	Intron	2
chr14:20 016 135	351	SINE (Alu)	OR4K14	Intron	2
chr14:21 573 514	327	SINE (Alu)	OR10G3	Intron	2
chr14:22 637 543	523	Retroposon (SVA)	OR6J1	Intron	1
chr14:23 975 026	311	LINE (L1)	DHRS4L2	Intron	2
chr14:24 212 676	164	SINE (Alu)	CHMP4A	Promoter	1
chr14:24 212 676	164	SINE (Alu)	TM9SF1	Intron	1
chr14:24 473 723	118	LTR (ERV1)	LOC101927045	Intron	2
chr14:27 832 044	438	LINE (L1)	MIR3171HG	Intron	2
chr14:30 712 057	330	SINE (Alu)	SCFD1	Intron	2
chr14:30 975 089	307	SINE (Alu)	STRN3	Intron	2
chr14:34 024 131	313	SINE (Alu)	LOC102724945	Intron	2
chr14:37 555 345	126	Retroposon (SVA)	MIPOL1	Intron	2
chr14:39 843 742	321	SINE (Alu)	LOC105370462	Intron	2
chr14:40 110 466	324	SINE (Alu)	LOC105370462	Intron	2
chr14:40 123 223	131	SINE (Alu)	LOC105370462	Intron	2
chr14:44 053 098	307	SINE (Alu)	LINC02307	Intron	2
chr14:51 252 267	311	SINE (Alu)	TMX1	Intron	2
chr14:52 837 362	55	LTR (ERV1)	LOC105370500	Intron	2
chr14:53 311 386	324	SINE (Alu)	LOC105370502	Intron	2
chr14:55 329 133	310	SINE (Alu)	FBXO34	Intron	2
chr14:57 041 271	329	SINE (Alu)	OTX2-AS1	Intron	2
chr14:59 987 435	326	SINE (Alu)	LRRC9	Intron	2
chr14:60 065 669	319	SINE (Alu)	PCNX4-DT	Intron	2
chr14:60 108 770	313	SINE (Alu)	PCNX4	Intron	2
chr14:62 759 564	331	SINE (Alu)	KCNH5	Intron	2
chr14:64 038 277	388	Retroposon (SVA)	SYNE2	Intron	2
chr14:70 397 976	57	LTR (ERV1)	SYNJ2BP-COX16	Intron	2
chr14:70 813 500	127	SINE (Alu)	MAP3K9-DT	Intron	2
chr14:73 353 583	134	SINE (Alu)	NUMB	Intron	2
chr14:75 032 865	321	SINE (Alu)	MLH3	Intron	2
chr14:78 516 349	330	SINE (Alu)	NRXN3	Intron	2
chr14:80 488 209	1 887	LINE (L1)	CEP128	Intron	2
chr14:80 495 706	339	SINE (Alu)	CEP128	Intron	2
chr14:81 320 428	2 695	Retroposon (SVA)	STON2	Intron	2
chr14:85 915 450	5 707	LINE (L1)	LINC02328	Intron	2
chr14:88 276 264	297	SINE (Alu)	KCNK10	Intron	2
chr14:89 608 202	143	SINE (Alu)	FOXN3	Intron	1
chr14:89 788 452	266	SINE (Alu)	FOXN3	Intron	2
chr14:89 788 466	133	SINE (Alu)	FOXN3	Intron	2
chr14:90 797 289	171	SINE (Alu)	TTC7B	Intron	2
chr14:91 658 708	316	SINE (Alu)	CATSPERB	Intron	2
chr14:100 345 058	95	Retroposon (SVA)	WARS1	Intron	2
chr15:25 490 505	321	SINE (Alu)	LINC02250	Intron	2
chr15:27 520 633	323	SINE (Alu)	GABRG3	Intron	2
chr15:27 930 643	392	LINE (L1)	OCA2	Intron	2
chr15:30 674 565	185	SINE (Alu)	LOC100288637	Intron	2
chr15:32 821 095	312	SINE (Alu)	FMN1	Intron	2
chr15:34 346 662	81	SINE (Alu)	NUTM1	Intron	2
chr15:35 804 106	310	SINE (Alu)	DPH6-DT	Intron	2
chr15:37 415 687	667	LINE (L1)	LOC105370772	Intron	2
chr15:38 477 226	335	SINE (Alu)	FAM98B	Intron	2
chr15:39 894 051	98	Retroposon (SVA)	GPR176	Intron	2
chr15:40 422 765	179	SINE (Alu)	IVD	Intron	2
chr15:43 076 793	126	Retroposon (SVA)	UBR1	Intron	2
chr15:45 277 713	311	SINE (Alu)	SLC28A2-AS1	Intron	2
chr15:47 279 101	87	LINE (L1)	SEMA6D	Intron	2
chr15:60 365 043	311	SINE (Alu)	ANXA2	Intron	2
chr15:60 924 332	322	SINE (Alu)	RORA	Intron	2
chr15:66 375 798	323	SINE (Alu)	TIPIN	Intron	2
chr15:67 352 554	338	SINE (Alu)	IQCH	Intron	2
chr15:68 395 669	4 441	LINE (L1)	ITGA11	Intron	2
chr15:70 861 401	310	SINE (Alu)	LRRC49	Intron	2
chr15:71 757 533	132	SINE (Alu)	THSD4	Intron	2
chr15:72 347 195	319	SINE (Alu)	HEXA	Promoter	2
chr15:72 347 195	319	SINE (Alu)	LOC105370887	Intron	2
chr15:73 690 968	322	SINE (Alu)	CD276	Intron	2
chr15:75 481 597	400	Retroposon (SVA)	PTPN9	Intron	1
chr15:75 503 556	192	Retroposon (SVA)	PTPN9	Intron	2
chr15:75 504 155	142	Retroposon (SVA)	PTPN9	Intron	2
chr15:76 230 513	82	SINE (Alu)	ETFA	Intron	2
chr15:77 469 236	324	SINE (Alu)	HMG20A	Intron	2
chr15:78 132 274	163	SINE (Alu)	CIB2	Promoter	2
chr15:78 132 274	163	SINE (Alu)	IDH3A	Intron	2
chr15:78 644 312	319	SINE (Alu)	CHRNB4	Intron	2
chr15:80 355 807	93	SINE (Alu)	ARNT2-DT	Intron	2
chr15:80 370 223	315	SINE (Alu)	ARNT2-DT	Intron	2
chr15:81 100 242	315	SINE (Alu)	CFAP161	Intron	2
chr15:84 854 228	317	SINE (Alu)	ALPK3	Intron	2
chr15:84 900 312	68	SINE (Alu)	SLC28A1	Intron	1
chr15:85 681 718	329	SINE (Alu)	AKAP13	Promoter	2
chr15:85 681 718	329	SINE (Alu)	AKAP13	Intron	2
chr15:89 854 811	78	Retroposon (SVA)	AP3S2	Intron	1
chr15:93 023 921	317	SINE (Alu)	CHD2	Intron	2
chr15:93 292 547	316	SINE (Alu)	LOC105370982	Intron	2
chr15:94 276 660	304	SINE (Alu)	MCTP2	Intron	2
chr15:100 270 770	308	SINE (Alu)	ADAMTS17	Intron	2
chr15:100 272 601	317	SINE (Alu)	ADAMTS17	Intron	2
chr16:1 599 469	805	Retroposon (SVA)	LOC105371046	Intron	2
chr16:2 052 218	328	SINE (Alu)	TSC2	Intron	2
chr16:3 039 306	321	SINE (Alu)	MMP25-AS1	Intron	2
chr16:5 202 370	223	Retroposon (SVA)	LOC105371067	Intron	1
chr16:5 295 020	319	SINE (Alu)	RBFOX1	Intron	2
chr16:6 743 824	1 435	LINE (L1)	RBFOX1	Intron	2
chr16:7 176 223	327	SINE (Alu)	RBFOX1	Intron	2
chr16:7 491 379	315	SINE (Alu)	RBFOX1	Intron	2
chr16:11 336 032	294	Retroposon (SVA)	LOC105371082	Intron	2
chr16:13 437 866	55	SINE (Alu)	SHISA9	Intron	2
chr16:21 227 729	317	SINE (Alu)	LOC105371123	Intron	2
chr16:24 109 272	488	Retroposon (SVA)	PRKCB	Intron	2
chr16:24 316 243	316	SINE (Alu)	CACNG3	Intron	2
chr16:28 697 996	49	Retroposon (SVA)	EIF3C	Intron	1
chr16:31 105 127	143	Retroposon (SVA)	BCKDK	Promoter	2
chr16:56 739 527	819	Retroposon (SVA)	NUP93	Intron	1
chr16:59 942 554	317	SINE (Alu)	LINC02141	Intron	2
chr16:60 007 242	316	SINE (Alu)	LINC02141	Intron	2
chr16:65 448 283	314	SINE (Alu)	LINC00922	Intron	2
chr16:69 157 890	318	SINE (Alu)	UTP4	Intron	2
chr16:69 361 930	323	SINE (Alu)	TERF2	Promoter	2
chr16:69 361 930	323	SINE (Alu)	TERF2	Intron	2
chr16:69 820 419	53	SINE (Alu)	WWP2	Intron	2
chr16:71 733 511	74	SINE (Alu)	AP1G1	Intron	2
chr16:72 695 339	1 624	LINE (L1)	ZFHX3-AS1	Intron	2
chr16:79 156 823	327	SINE (Alu)	WWOX	Intron	2
chr16:80 183 526	322	SINE (Alu)	DYNLRB2-AS1	Intron	2
chr16:82 131 072	300	SINE (Alu)	HSD17B2-AS1	Intron	2
chr16:83 099 623	334	SINE (Alu)	CDH13	Intron	2
chr16:83 632 754	331	SINE (Alu)	CDH13	Intron	2
chr16:89 224 966	321	SINE (Alu)	ZNF778	Intron	2
chr16:942 520	68	LINE (L1)	LMF1	Intron	2
chr17:1 212 117	320	SINE (Alu)	ABR	Intron	2
chr17:2 448 174	125	Retroposon (SVA)	METTL16	Intron	2
chr17:3 284 831	262	SINE (Alu)	OR3A2	Promoter	2
chr17:3 284 831	262	SINE (Alu)	OR3A2	Intron	2
chr17:3 544 162	132	SINE (Alu)	TRPV3	Intron	2
chr17:9 269 002	133	SINE (Alu)	STX8	Intron	2
chr17:11 972 684	57	LTR (ERV1)	ZNF18	Intron	2
chr17:13 896 324	313	SINE (Alu)	COX10-DT	Intron	2
chr17:16 095 665	104	Retroposon (SVA)	NCOR1	Intron	2
chr17:16 699 502	133	SINE (Alu)	CCDC144A	Intron	2
chr17:18 888 657	351	Retroposon (SVA)	PRPSAP2	Intron	1
chr17:19 627 853	800	Retroposon (SVA)	SLC47A1P2	Intron	2
chr17:20 038 316	2 413	Retroposon (SVA)	SPECC1	Intron	2
chr17:20 985 239	96	Retroposon (SVA)	LOC339260	Intron	1
chr17:21 292 724	121	SINE (Alu)	MAP2K3	Intron	1
chr17:28 456 137	1 157	Retroposon (SVA)	RSKR	Intron	1
chr17:28 604 067	97	Retroposon (SVA)	SPAG5-AS1	Intron	2
chr17:32 310 717	169	SINE (Alu)	RHBDL3	Intron	2
chr17:32 318 457	184	SINE (Alu)	RHBDL3	Intron	2
chr17:32 566 829	312	SINE (Alu)	MYO1D	Intron	2
chr17:42 106 634	107	SINE (Alu)	DHX58	Intron	2
chr17:42 973 206	273	Retroposon (SVA)	PTGES3L-AARSD1	Intron	2
chr17:43 128 193	125	LTR (ERV1)	NBR2	Intron	2
chr17:43 251 404	194	LTR (ERV1)	CCDC200	Intron	1
chr17:43 289 877	214	LTR (ERV1)	CCDC200	Intron	1
chr17:44 181 115	253	Retroposon (SVA)	ASB16-AS1	Intron	2
chr17:46 210 497	69	LINE (CR1)	KANSL1	Intron	2
chr17:47 325 026	266	SINE (Alu)	ITGB3	Intron	2
chr17:48 427 626	324	SINE (Alu)	SKAP1	Intron	2
chr17:51 331 423	330	SINE (Alu)	LINC02071	Intron	2
chr17:53 879 754	320	SINE (Alu)	LOC107985001	Intron	2
chr17:56 870 207	295	SINE (Alu)	TRIM25	Intron	2
chr17:57 848 853	310	SINE (Alu)	MRPS23	Intron	2
chr17:57 915 231	320	SINE (Alu)	LOC107985065	Intron	2
chr17:62 996 973	192	SINE (Alu)	TANC2	Intron	2
chr17:63 488 528	289	SINE (Alu)	ACE	Intron	2
chr17:67 550 440	300	SINE (Alu)	PITPNC1	Intron	2
chr17:69 879 207	314	SINE (Alu)	LINC01483	Intron	2
chr17:72 701 862	139	SINE (Alu)	SLC39A11	Intron	1
chr17:76 591 926	319	SINE (Alu)	SNHG16	Intron	2
chr17:77 284 126	87	SINE (Alu)	SEPTIN9	Intron	2
chr17:78 156 964	316	SINE (Alu)	C17orf99	Intron	2
chr17:80 113 807	314	SINE (Alu)	GAA	Intron	2
chr17:81 146 946	321	SINE (Alu)	AATK	Intron	2
chr17:82 631 585	304	SINE (Alu)	WDR45B	Intron	2
chr17:82 802 100	1 407	Retroposon (SVA)	TBCD	Intron	2
chr17:572 389	97	Retroposon (SVA)	VPS53	Intron	2
chr17:598 424	156	Retroposon (SVA)	VPS53	Intron	2
chr17:598 874	394	Retroposon (SVA)	VPS53	Intron	2
chr17:831 916	310	SINE (Alu)	NXN	Intron	2
chr18:1 235 778	322	SINE (Alu)	LOC105371953	Intron	2
chr18:1 955 406	63	LTR (ERV1)	LOC105371958	Intron	2
chr18:2 304 395	270	SINE (Alu)	LOC105371956	Intron	2
chr18:6 827 331	96	Retroposon (SVA)	ARHGAP28	Intron	1
chr18:10 911 126	317	SINE (Alu)	PIEZO2	Intron	2
chr18:23 577 365	155	LTR (ERV1)	NPC1	Promoter	2
chr18:23 577 365	155	LTR (ERV1)	NPC1	Intron	2
chr18:26 958 048	317	SINE (Alu)	AQP4-AS1	Intron	2
chr18:33 953 226	282	SINE (Alu)	NOL4	Intron	2
chr18:49 203 113	1 032	Retroposon (SVA)	DYM	Intron	1
chr18:53 460 168	319	SINE (Alu)	DCC	Intron	2
chr18:56 689 827	331	SINE (Alu)	WDR7	Intron	2
chr18:57 632 999	409	Retroposon (SVA)	ATP8B1-AS1	Intron	1
chr18:57 642 331	497	LTR (ERV1)	ATP8B1-AS1	Intron	1
chr18:57 642 411	507	LTR (ERV1)	ATP8B1-AS1	Intron	1
chr18:57 713 754	142	SINE (Alu)	LOC105372141	Intron	2
chr18:59 482 873	314	SINE (Alu)	CCBE1	Intron	2
chr18:65 820 032	317	SINE (Alu)	CDH7	Intron	2
chr18:68 731 922	315	SINE (Alu)	CCDC102B	Intron	2
chr18:68 905 255	332	SINE (Alu)	CCDC102B	Intron	2
chr18:69 492 815	314	SINE (Alu)	DOK6	Intron	2
chr18:76 241 968	323	SINE (Alu)	LOC105372209	Intron	2
chr18:76 851 079	311	SINE (Alu)	ZNF236	Promoter	2
chr18:76 851 079	311	SINE (Alu)	ZNF236	Intron	2
chr18:79 895 735	66	LINE (L1)	KCNG2	Intron	2
chr19:1 923 899	133	SINE (Alu)	SCAMP4	Intron	1
chr19:2 025 044	308	SINE (Alu)	LOC107985278	Intron	2
chr19:2 183 925	314	SINE (Alu)	DOT1L	Intron	2
chr19:2 383 641	308	SINE (Alu)	TMPRSS9	Intron	2
chr19:2 559 735	124	SINE (Alu)	GNG7	Intron	2
chr19:3 287 350	318	SINE (Alu)	CELF5	Intron	2
chr19:9 491 839	1 072	LTR (ERVL)	ZNF560	Intron	2
chr19:10 337 271	309	SINE (Alu)	ICAM3	Intron	2
chr19:12 621 718	128	Retroposon (SVA)	ZNF791	Intron	2
chr19:17 722 271	165	SINE (Alu)	MAP1S	Intron	2
chr19:20 149 557	148	Retroposon (SVA)	LOC105372310	Intron	2
chr19:20 437 085	77	LTR (ERVL)	LOC105372317	Intron	2
chr19:20 563 165	314	SINE (Alu)	LOC105372316	Intron	2
chr19:21 103 183	335	SINE (Alu)	ZNF714	Intron	2
chr19:22 634 026	312	SINE (Alu)	ZNF492	Promoter	2
chr19:22 636 885	307	SINE (Alu)	ZNF492	Intron	2
chr19:23 568 276	576	Retroposon (SVA)	LOC105372337	Intron	2
chr19:23 768 603	320	SINE (Alu)	RPSAP58	Intron	2
chr19:23 828 490	1 547	Retroposon (SVA)	RPSAP58	Intron	2
chr19:29 364 872	960	LTR (ERVK)	VSTM2B-DT	Intron	2
chr19:31 199 763	328	SINE (Alu)	LINC01791	Intron	2
chr19:36 480 620	311	SINE (Alu)	ZNF566	Intron	2
chr19:37 540 540	311	SINE (Alu)	ZNF793	Intron	2
chr19:38 541 453	135	SINE (Alu)	RYR1	Intron	2
chr19:39 905 477	311	SINE (Alu)	FCGBP	Intron	2
chr19:46 509 015	312	SINE (Alu)	PPP5D1P	Intron	2
chr19:53 194 287	202	SINE (Alu)	ZNF665	Promoter	2
chr19:53 794 570	313	SINE (Alu)	NLRP12	Intron	2
chr19:54 753 609	315	SINE (Alu)	KIR2DL1	Intron	1
chr19:54 999 012	49	Retroposon (SVA)	NLRP2	Intron	1
chr20:1 150 047	308	SINE (Alu)	PSMF1	Intron	2
chr20:8 689 955	303	SINE (Alu)	PLCB1	Intron	2
chr20:8 835 843	301	SINE (Alu)	PLCB1	Intron	2
chr20:9 624 548	318	SINE (Alu)	PAK5	Intron	2
chr20:9 641 462	118	LTR (ERV1)	PAK5	Intron	2
chr20:9 660 318	287	SINE (Alu)	PAK5	Intron	2
chr20:11 300 930	125	LINE (L1)	LOC339593	Intron	2
chr20:15 125 949	290	SINE (Alu)	MACROD2	Intron	2
chr20:18 689 891	175	SINE (Alu)	DTD1	Intron	2
chr20:25 562 196	445	Retroposon (SVA)	NINL	Intron	2
chr20:26 210 320	323	SINE (Alu)	MIR663AHG	Promoter	2
chr20:26 210 320	323	SINE (Alu)	MIR663AHG	Intron	2
chr20:31 470 408	126	Retroposon (SVA)	DEFB124	Intron	2
chr20:34 205 638	321	SINE (Alu)	ASIP	Intron	2
chr20:35 041 057	96	LTR (ERVL)	TRPC4AP	Intron	1
chr20:35 564 371	148	SINE (Alu)	FER1L4	Intron	2
chr20:47 525 869	146	Retroposon (SVA)	NCOA3	Intron	2
chr20:54 021 396	314	SINE (Alu)	BCAS1	Intron	2
chr20:59 138 375	308	SINE (Alu)	ZNF831	Intron	2
chr20:60 439 006	74	LINE (L1)	MIR646HG	Intron	2
chr20:60 600 158	76	LTR (ERVL)	MIR646HG	Intron	2
chr21:10 508 068	56	LINE (L1)	BAGE2	Intron	2
chr21:14 980 612	323	SINE (Alu)	LINC02246	Intron	2
chr21:15 556 506	386	LINE (L1)	LOC101927745	Intron	2
chr21:16 398 231	95	LTR (ERV1)	MIR99AHG	Intron	1
chr21:18 144 980	3 394	LINE (L1)	CHODL	Intron	2
chr21:21 411 087	314	LTR (ERVL)	NCAM2	Intron	2
chr21:24 981 910	322	SINE (Alu)	LINC01692	Intron	2
chr21:32 026 204	319	SINE (Alu)	HUNK	Intron	2
chr21:32 428 505	302	SINE (Alu)	EVA1C	Intron	2
chr21:32 433 901	139	SINE (Alu)	EVA1C	Intron	2
chr21:32 482 933	67	SINE (Alu)	EVA1C	Intron	2
chr21:35 865 629	332	SINE (Alu)	LOC101928269	Intron	2
chr21:37 632 243	321	SINE (Alu)	KCNJ6	Intron	2
chr21:37 685 531	316	SINE (Alu)	KCNJ6	Intron	2
chr21:45 622 444	326	SINE (Alu)	LOC107985485	Intron	2
chr22:11 860 398	309	SINE (Alu)	LOC107984037	Intron	2
chr22:17 224 399	332	SINE (Alu)	ADA2	Intron	2
chr22:17 567 654	357	SINE (Alu)	SLC25A18	Intron	2
chr22:18 106 942	188	LTR (ERVL)	TUBA8	Intron	1
chr22:18 201 956	74	SINE (Alu)	FAM230D	Intron	1
chr22:19 373 921	124	SINE (Alu)	HIRA	Intron	2
chr22:22 644 845	315	SINE (Alu)	POM121L1P	Promoter	2
chr22:22 644 845	315	SINE (Alu)	GGTLC2	Intron	2
chr22:24 000 536	323	SINE (Alu)	GSTT4	Intron	2
chr22:26 772 985	453	Retroposon (SVA)	MIATNB	Intron	1
chr22:26 773 145	905	Retroposon (SVA)	MIATNB	Intron	2
chr22:26 773 147	125	Retroposon (SVA)	MIATNB	Intron	1
chr22:26 773 373	452	Retroposon (SVA)	MIATNB	Intron	1
chr22:28 380 048	320	SINE (Alu)	TTC28	Intron	2
chr22:30 597 428	159	LTR (ERV1)	PES1	Intron	2
chr22:32 682 040	149	LINE (L2)	SYN3	Intron	2
chr22:33 132 511	316	SINE (Alu)	LINC01640	Intron	2
chr22:34 034 609	325	SINE (Alu)	LINC01643	Intron	2
chr22:40 199 779	320	SINE (Alu)	TNRC6B	Intron	2
chr22:40 501 145	128	Retroposon (SVA)	MRTFA	Intron	2
chr22:40 501 490	148	Retroposon (SVA)	MRTFA	Intron	1
chr22:40 537 218	96	Retroposon (SVA)	MRTFA	Intron	1
chr22:40 537 628	776	Retroposon (SVA)	MRTFA	Intron	1
chr22:41 314 923	312	SINE (Alu)	ZC3H7B	Intron	2
chr22:42 112 847	117	LTR (ERV1)	NDUFA6-DT	Intron	1
chr22:42 818 815	313	SINE (Alu)	ARFGAP3	Intron	2
chr22:43 928 708	1 148	LINE (L1)	PNPLA3	Intron	2
chr22:45 166 717	124	SINE (Alu)	NUP50	Intron	2
chr22:49 879 740	216	SINE (Alu)	ZBED4	Intron	2
chrX:1 304 189	333	SINE (Alu)	CSF2RA	Intron	2
chrX:1 496 843	135	SINE (Alu)	P2RY8	Intron	2
chrX:6 197 435	114	SINE (Alu)	NLGN4X	Intron	2
chrX:16 964 930	124	Retroposon (SVA)	REPS2	Intron	2
chrX:19 074 340	53	SINE (Alu)	ADGRG2	Intron	2
chrX:24 709 079	128	Retroposon (SVA)	POLA1	Intron	2
chrX:29 333 929	49	Retroposon (SVA)	IL1RAPL1	Intron	2
chrX:33 284 732	306	SINE (Alu)	DMD	Intron	2
chrX:34 249 205	394	LINE (L1)	LOC105373153	Intron	2
chrX:45 040 273	164	Retroposon (SVA)	KDM6A	Intron	2
chrX:53 967 164	125	Retroposon (SVA)	PHF8	Intron	2
chrX:65 457 302	346	Retroposon (SVA)	ZC3H12B	Intron	2
chrX:70 350 008	115	Retroposon (SVA)	KIF4A	Intron	2
chrX:72 681 503	124	Retroposon (SVA)	PHKA1	Intron	2
chrX:72 681 897	226	Retroposon (SVA)	PHKA1	Intron	2
chrX:80 396 883	834	Retroposon (SVA)	TENT5D	Intron	1
chrX:84 080 389	1 359	LINE (L1)	RPS6KA6	Intron	2
chrX:85 135 734	326	SINE (Alu)	SATL1	Intron	2
chrX:92 170 920	134	SINE (Alu)	PCDH11X	Intron	2
chrX:97 069 995	319	SINE (Alu)	DIAPH2	Intron	2
chrX:100 972 832	746	Retroposon (SVA)	ARL13A	Intron	2
chrX:107 501 516	133	SINE (Alu)	FRMPD3	Intron	2
chrX:112 314 520	6 052	LINE (L1)	RTL4	Intron	2
chrX:122 435 457	327	SINE (Alu)	LOC101928359	Intron	2
chrX:124 128 744	223	Retroposon (SVA)	STAG2	Intron	1
chrX:131 467 165	76	LINE (L1)	IGSF1	Intron	2
chrX:137 034 007	346	SINE (Alu)	GPR101	Promoter	2
chrX:147 992 468	50	Retroposon (SVA)	FMR1NB	Intron	1
chrX:147 992 492	800	Retroposon (SVA)	FMR1NB	Intron	1
chrX:656 846	236	SINE (Alu)	SHOX	Intron	1

2.2 Class II Elements

2.2.1 Distribution

1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 4 rows.

Position	Length	Type	Gene	Annotation	Occurrences
chr3:197 847 677	57	DNA (TcMar)	LRCH3	Promoter	2
chr3:197 847 677	57	DNA (TcMar)	LRCH3	Intron	2
chr11:13 001 659	81	DNA (hAT)	RASSF10-DT	Intron	2
chr11:41 072 278	87	DNA (TcMar)	LRRC4C	Intron	2

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

• 1 655 TE deletions have been found, adding up to 3 220 occurrences among cases.
• These deletions have a mean prevalence per sample of 1.9 ± 0.23 (median of 2).
• The deletion length is in the range of 303-332 bp for 50% of them (Q2-Q3, both included), and the maximum length found was 8 486, for a deleted ERVK sequence.

3.1 Allele frequency

• The mean AF for deletions is 0.8 ± 0.25 (median of 1).
• With 904 (904 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 40 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is Pyrin domain binding (1.43467e-10), and the highest (among the lowest 10) is taste receptor activity (0.01642528). The ratio is 114488184.39, i.e., they differ in 8 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0032090	Pyrin domain binding	10/871	11/20758	1.704e-13	1.435e-10	1.309e-10	10	0.01148
GO:0005085	guanyl-nucleotide exchange factor activity	32/871	245/20758	1.257e-08	5.292e-06	4.83e-06	32	0.03674
GO:0005096	GTPase activator activity	35/871	304/20758	6.825e-08	1.916e-05	1.748e-05	35	0.04018
GO:0046703	natural killer cell lectin-like receptor binding	8/871	27/20758	1.014e-05	0.002135	0.001948	8	0.009185
GO:0005216	ion channel activity	40/871	480/20758	3.142e-05	0.005292	0.004829	40	0.04592
GO:0033038	bitter taste receptor activity	9/871	44/20758	7.301e-05	0.01025	0.00935	9	0.01033
GO:0022836	gated channel activity	32/871	372/20758	0.0001057	0.01173	0.01071	32	0.03674
GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	13/871	92/20758	0.0001188	0.01173	0.01071	13	0.01493
GO:1902936	phosphatidylinositol bisphosphate binding	15/871	118/20758	0.0001254	0.01173	0.01071	15	0.01722
GO:0008527	taste receptor activity	9/871	50/20758	0.000206	0.01643	0.01499	9	0.01033
GO:0035091	phosphatidylinositol binding	26/871	288/20758	0.0002146	0.01643	0.01499	26	0.02985
GO:0030165	PDZ domain binding	12/871	89/20758	0.0003357	0.02356	0.0215	12	0.01378
GO:0140327	flippase activity	5/871	17/20758	0.0005218	0.0338	0.03084	5	0.005741
GO:0042578	phosphoric ester hydrolase activity	31/871	396/20758	0.0006866	0.0413	0.03769	31	0.03559
GO:0003779	actin binding	35/871	471/20758	0.0008205	0.04605	0.04203	35	0.04018
GO:0004115	3',5'-cyclic-AMP phosphodiesterase activity	5/871	19/20758	0.0009144	0.04812	0.04392	5	0.005741
GO:0005253	anion channel activity	12/871	101/20758	0.001067	0.05254	0.04795	12	0.01378
GO:0050811	GABA receptor binding	5/871	20/20758	0.001177	0.05254	0.04795	5	0.005741
GO:0045296	cadherin binding	28/871	357/20758	0.001185	0.05254	0.04795	28	0.03215
GO:0005516	calmodulin binding	19/871	210/20758	0.001411	0.05712	0.05213	19	0.02181
GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	5/871	21/20758	0.001492	0.05712	0.05213	5	0.005741
GO:0019198	transmembrane receptor protein phosphatase activity	5/871	21/20758	0.001492	0.05712	0.05213	5	0.005741
GO:0008081	phosphoric diester hydrolase activity	11/871	95/20758	0.002093	0.07406	0.06759	11	0.01263
GO:0070679	inositol 1,4,5 trisphosphate binding	4/871	14/20758	0.002199	0.07406	0.06759	4	0.004592
GO:0140333	glycerophospholipid flippase activity	4/871	14/20758	0.002199	0.07406	0.06759	4	0.004592
GO:0008093	cytoskeletal anchor activity	5/871	23/20758	0.002302	0.07455	0.06804	5	0.005741
GO:0005262	calcium channel activity	13/871	126/20758	0.002467	0.07693	0.07021	13	0.01493
GO:1901981	phosphatidylinositol phosphate binding	17/871	191/20758	0.002913	0.08759	0.07994	17	0.01952
GO:0140303	intramembrane lipid transporter activity	7/871	47/20758	0.003247	0.09428	0.08604	7	0.008037
GO:0022839	ion gated channel activity	7/871	48/20758	0.003666	0.1023	0.09333	7	0.008037
GO:0005254	chloride channel activity	10/871	88/20758	0.003765	0.1023	0.09333	10	0.01148
GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	5/871	26/20758	0.004056	0.1035	0.09444	5	0.005741
GO:0008266	poly(U) RNA binding	5/871	26/20758	0.004056	0.1035	0.09444	5	0.005741
GO:0046873	metal ion transmembrane transporter activity	32/871	466/20758	0.00454	0.1124	0.1026	32	0.03674
GO:0004674	protein serine/threonine kinase activity	32/871	470/20758	0.005143	0.1237	0.1129	32	0.03674
GO:0004112	cyclic-nucleotide phosphodiesterase activity	5/871	28/20758	0.005655	0.125	0.1141	5	0.005741
GO:0005547	phosphatidylinositol-3,4,5-trisphosphate binding	6/871	40/20758	0.00608	0.125	0.1141	6	0.006889
GO:0005543	phospholipid binding	33/871	495/20758	0.006193	0.125	0.1141	33	0.03789
GO:0004435	phosphatidylinositol phospholipase C activity	5/871	29/20758	0.006601	0.125	0.1141	5	0.005741
GO:0008187	poly-pyrimidine tract binding	5/871	29/20758	0.006601	0.125	0.1141	5	0.005741
GO:0045499	chemorepellent activity	5/871	29/20758	0.006601	0.125	0.1141	5	0.005741
GO:0140326	ATPase-coupled intramembrane lipid transporter activity	5/871	29/20758	0.006601	0.125	0.1141	5	0.005741
GO:0015103	inorganic anion transmembrane transporter activity	15/871	174/20758	0.006674	0.125	0.1141	15	0.01722
GO:0005548	phospholipid transporter activity	8/871	67/20758	0.006803	0.125	0.1141	8	0.009185
GO:0008509	anion transmembrane transporter activity	24/871	331/20758	0.006822	0.125	0.1141	24	0.02755
GO:0015085	calcium ion transmembrane transporter activity	13/871	142/20758	0.006842	0.125	0.1141	13	0.01493
GO:0004791	thioredoxin-disulfide reductase activity	3/871	10/20758	0.007079	0.125	0.1141	3	0.003444
GO:0004890	GABA-A receptor activity	4/871	19/20758	0.007206	0.125	0.1141	4	0.004592
GO:0031267	small GTPase binding	22/871	297/20758	0.007347	0.125	0.1141	22	0.02526
GO:0004725	protein tyrosine phosphatase activity	11/871	112/20758	0.007423	0.125	0.1141	11	0.01263
GO:0005261	cation channel activity	25/871	360/20758	0.009846	0.1574	0.1437	25	0.0287
GO:0098960	postsynaptic neurotransmitter receptor activity	9/871	86/20758	0.009932	0.1574	0.1437	9	0.01033
GO:0004629	phospholipase C activity	5/871	32/20758	0.0101	0.1574	0.1437	5	0.005741
GO:0070566	adenylyltransferase activity	5/871	32/20758	0.0101	0.1574	0.1437	5	0.005741
GO:0005451	monovalent cation:proton antiporter activity	5/871	33/20758	0.0115	0.1645	0.1502	5	0.005741
GO:0015299	solute:proton antiporter activity	5/871	33/20758	0.0115	0.1645	0.1502	5	0.005741
GO:0051020	GTPase binding	23/871	329/20758	0.01201	0.1645	0.1502	23	0.02641
GO:0005245	voltage-gated calcium channel activity	6/871	46/20758	0.01201	0.1645	0.1502	6	0.006889
GO:0001851	complement component C3b binding	3/871	12/20758	0.01219	0.1645	0.1502	3	0.003444
GO:0004090	carbonyl reductase (NADPH) activity	3/871	12/20758	0.01219	0.1645	0.1502	3	0.003444
GO:0005229	intracellular calcium activated chloride channel activity	4/871	22/20758	0.01231	0.1645	0.1502	4	0.004592
GO:0031681	G-protein beta-subunit binding	4/871	22/20758	0.01231	0.1645	0.1502	4	0.004592
GO:0061778	intracellular chloride channel activity	4/871	22/20758	0.01231	0.1645	0.1502	4	0.004592
GO:0017124	SH3 domain binding	12/871	139/20758	0.01418	0.1865	0.1702	12	0.01378
GO:0022843	voltage-gated cation channel activity	13/871	156/20758	0.01441	0.1867	0.1704	13	0.01493
GO:1904315	transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential	7/871	62/20758	0.01481	0.1889	0.1724	7	0.008037
GO:0022851	GABA-gated chloride ion channel activity	3/871	13/20758	0.01536	0.1902	0.1736	3	0.003444
GO:0047134	protein-disulfide reductase (NAD(P)) activity	3/871	13/20758	0.01536	0.1902	0.1736	3	0.003444
GO:0043178	alcohol binding	9/871	93/20758	0.01607	0.1961	0.179	9	0.01033
GO:0030215	semaphorin receptor binding	4/871	24/20758	0.01674	0.2014	0.1838	4	0.004592
GO:0098631	cell adhesion mediator activity	7/871	64/20758	0.01742	0.2066	0.1885	7	0.008037
GO:0005244	voltage-gated ion channel activity	16/871	213/20758	0.01796	0.2072	0.1891	16	0.01837
GO:0022832	voltage-gated channel activity	16/871	213/20758	0.01796	0.2072	0.1891	16	0.01837
GO:0005161	platelet-derived growth factor receptor binding	3/871	14/20758	0.01895	0.2127	0.1941	3	0.003444
GO:0031404	chloride ion binding	3/871	14/20758	0.01895	0.2127	0.1941	3	0.003444
GO:0106310	protein serine kinase activity	25/871	383/20758	0.01988	0.2202	0.201	25	0.0287
GO:0032395	MHC class II receptor activity	7/871	67/20758	0.02191	0.2358	0.2152	7	0.008037
GO:0016779	nucleotidyltransferase activity	11/871	131/20758	0.0221	0.2358	0.2152	11	0.01263
GO:0015079	potassium ion transmembrane transporter activity	13/871	166/20758	0.02291	0.2358	0.2152	13	0.01493
GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3/871	15/20758	0.02296	0.2358	0.2152	3	0.003444
GO:0031005	filamin binding	3/871	15/20758	0.02296	0.2358	0.2152	3	0.003444
GO:0034236	protein kinase A catalytic subunit binding	3/871	15/20758	0.02296	0.2358	0.2152	3	0.003444
GO:0098632	cell-cell adhesion mediator activity	6/871	54/20758	0.02502	0.2423	0.2211	6	0.006889
GO:0030507	spectrin binding	4/871	27/20758	0.02505	0.2423	0.2211	4	0.004592
GO:0000287	magnesium ion binding	17/871	240/20758	0.02506	0.2423	0.2211	17	0.01952
GO:0022824	transmitter-gated ion channel activity	7/871	69/20758	0.02532	0.2423	0.2211	7	0.008037
GO:0022835	transmitter-gated channel activity	7/871	69/20758	0.02532	0.2423	0.2211	7	0.008037
GO:0097110	scaffold protein binding	7/871	69/20758	0.02532	0.2423	0.2211	7	0.008037
GO:0015386	potassium:proton antiporter activity	3/871	16/20758	0.0274	0.2563	0.2339	3	0.003444
GO:0140328	floppase activity	3/871	16/20758	0.0274	0.2563	0.2339	3	0.003444
GO:0015108	chloride transmembrane transporter activity	10/871	119/20758	0.02815	0.2584	0.2358	10	0.01148
GO:0016917	GABA receptor activity	4/871	28/20758	0.02828	0.2584	0.2358	4	0.004592
GO:0016791	phosphatase activity	20/871	300/20758	0.02854	0.2584	0.2358	20	0.02296
GO:0099529	neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential	7/871	71/20758	0.02908	0.2601	0.2373	7	0.008037
GO:0005544	calcium-dependent phospholipid binding	6/871	56/20758	0.02934	0.2601	0.2373	6	0.006889
GO:0019199	transmembrane receptor protein kinase activity	8/871	88/20758	0.03135	0.275	0.2509	8	0.009185
GO:0046875	ephrin receptor binding	4/871	29/20758	0.03175	0.2756	0.2515	4	0.004592
GO:0015385	sodium:proton antiporter activity	3/871	17/20758	0.03226	0.2771	0.2529	3	0.003444
GO:0004721	phosphoprotein phosphatase activity	14/871	194/20758	0.03451	0.2935	0.2679	14	0.01607
GO:0070717	poly-purine tract binding	4/871	30/20758	0.03546	0.2986	0.2725	4	0.004592

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is natural killer cell inhibitory signaling pathway (9.923283e-42), and the highest (among the lowest 10) is negative regulation of defense response to virus (0.003825161). The ratio is 3.854733e+38, i.e., they differ in 19 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0002769	natural killer cell inhibitory signaling pathway	34/864	36/21069	2.132e-45	9.923e-42	9.624e-42	34	0.03935
GO:0002767	immune response-inhibiting cell surface receptor signaling pathway	34/864	61/21069	2.011e-31	4.68e-28	4.539e-28	34	0.03935
GO:0002765	immune response-inhibiting signal transduction	34/864	63/21069	8.946e-31	1.388e-27	1.346e-27	34	0.03935
GO:0002768	immune response-regulating cell surface receptor signaling pathway	63/864	470/21069	9.704e-17	1.129e-13	1.095e-13	63	0.07292
GO:0050689	negative regulation of defense response to virus by host	8/864	10/21069	3.241e-10	3.017e-07	2.926e-07	8	0.009259
GO:0051056	regulation of small GTPase mediated signal transduction	41/864	343/21069	8.768e-10	6.801e-07	6.596e-07	41	0.04745
GO:0010804	negative regulation of tumor necrosis factor-mediated signaling pathway	11/864	41/21069	5.288e-07	0.0003516	0.000341	11	0.01273
GO:0010975	regulation of neuron projection development	43/864	468/21069	7.499e-07	0.0004363	0.0004231	43	0.04977
GO:0007158	neuron cell-cell adhesion	7/864	17/21069	2.581e-06	0.001335	0.001294	7	0.008102
GO:0050687	negative regulation of defense response to virus	9/864	35/21069	8.489e-06	0.003825	0.00371	9	0.01042
GO:0032088	negative regulation of NF-kappaB transcription factor activity	17/864	121/21069	9.041e-06	0.003825	0.00371	17	0.01968
GO:0019835	cytolysis	9/864	37/21069	1.389e-05	0.005389	0.005226	9	0.01042
GO:0050885	neuromuscular process controlling balance	10/864	54/21069	5.927e-05	0.02122	0.02058	10	0.01157
GO:0007605	sensory perception of sound	19/864	169/21069	6.784e-05	0.02191	0.02125	19	0.02199
GO:0097105	presynaptic membrane assembly	5/864	12/21069	7.136e-05	0.02191	0.02125	5	0.005787
GO:0010803	regulation of tumor necrosis factor-mediated signaling pathway	12/864	78/21069	7.533e-05	0.02191	0.02125	12	0.01389
GO:0097090	presynaptic membrane organization	5/864	13/21069	0.000112	0.02955	0.02866	5	0.005787
GO:0034329	cell junction assembly	37/864	468/21069	0.0001143	0.02955	0.02866	37	0.04282
GO:0050919	negative chemotaxis	9/864	49/21069	0.0001477	0.03617	0.03508	9	0.01042
GO:0050954	sensory perception of mechanical stimulus	20/864	197/21069	0.000182	0.04235	0.04108	20	0.02315
GO:0031589	cell-substrate adhesion	33/864	411/21069	0.0001981	0.0439	0.04258	33	0.03819
GO:0046629	gamma-delta T cell activation	8/864	41/21069	0.0002219	0.04695	0.04553	8	0.009259
GO:0050691	regulation of defense response to virus by host	9/864	55/21069	0.0003669	0.07424	0.072	9	0.01042
GO:0031346	positive regulation of cell projection organization	30/864	375/21069	0.0004032	0.07819	0.07583	30	0.03472
GO:0072523	purine-containing compound catabolic process	9/864	56/21069	0.0004215	0.07846	0.07609	9	0.01042
GO:1900122	positive regulation of receptor binding	4/864	10/21069	0.0004837	0.08343	0.08091	4	0.00463
GO:0051932	synaptic transmission, GABAergic	10/864	69/21069	0.000484	0.08343	0.08091	10	0.01157
GO:0071709	membrane assembly	10/864	71/21069	0.0006106	0.1015	0.09843	10	0.01157
GO:0009582	detection of abiotic stimulus	16/864	156/21069	0.0006952	0.1116	0.1082	16	0.01852
GO:0006198	cAMP catabolic process	4/864	11/21069	0.0007355	0.1141	0.1107	4	0.00463
GO:0001895	retina homeostasis	11/864	87/21069	0.0008432	0.1206	0.1169	11	0.01273
GO:0007269	neurotransmitter secretion	16/864	159/21069	0.0008549	0.1206	0.1169	16	0.01852
GO:0099643	signal release from synapse	16/864	159/21069	0.0008549	0.1206	0.1169	16	0.01852
GO:0001580	detection of chemical stimulus involved in sensory perception of bitter taste	9/864	62/21069	0.0009068	0.1216	0.118	9	0.01042
GO:0007160	cell-matrix adhesion	23/864	273/21069	0.0009212	0.1216	0.118	23	0.02662
GO:0044091	membrane biogenesis	10/864	75/21069	0.0009463	0.1216	0.118	10	0.01157
GO:0007626	locomotory behavior	19/864	208/21069	0.0009669	0.1216	0.118	19	0.02199
GO:0009261	ribonucleotide catabolic process	8/864	51/21069	0.001031	0.1262	0.1224	8	0.009259
GO:0032228	regulation of synaptic transmission, GABAergic	7/864	40/21069	0.001086	0.1296	0.1257	7	0.008102
GO:0007034	vacuolar transport	17/864	180/21069	0.001217	0.1402	0.136	17	0.01968
GO:0001960	negative regulation of cytokine-mediated signaling pathway	12/864	105/21069	0.001235	0.1402	0.136	12	0.01389
GO:0030032	lamellipodium assembly	10/864	78/21069	0.001287	0.1426	0.1383	10	0.01157
GO:0099054	presynapse assembly	8/864	53/21069	0.001335	0.1445	0.1401	8	0.009259
GO:0048013	ephrin receptor signaling pathway	8/864	54/21069	0.001512	0.1585	0.1538	8	0.009259
GO:0050770	regulation of axonogenesis	16/864	168/21069	0.001533	0.1585	0.1538	16	0.01852
GO:0009266	response to temperature stimulus	19/864	217/21069	0.001591	0.1609	0.156	19	0.02199
GO:0015698	inorganic anion transport	18/864	201/21069	0.001624	0.1609	0.156	18	0.02083
GO:0046578	regulation of Ras protein signal transduction	19/864	218/21069	0.001678	0.1612	0.1563	19	0.02199
GO:1902547	regulation of cellular response to vascular endothelial growth factor stimulus	6/864	32/21069	0.001697	0.1612	0.1563	6	0.006944
GO:0050912	detection of chemical stimulus involved in sensory perception of taste	9/864	68/21069	0.001771	0.1616	0.1567	9	0.01042
GO:0050913	sensory perception of bitter taste	9/864	68/21069	0.001771	0.1616	0.1567	9	0.01042
GO:0060761	negative regulation of response to cytokine stimulus	12/864	110/21069	0.001849	0.1655	0.1605	12	0.01389
GO:0099172	presynapse organization	8/864	56/21069	0.001921	0.1687	0.1636	8	0.009259
GO:1905515	non-motile cilium assembly	9/864	69/21069	0.001964	0.1693	0.1642	9	0.01042
GO:0050905	neuromuscular process	16/864	173/21069	0.002074	0.1735	0.1682	16	0.01852
GO:0010810	regulation of cell-substrate adhesion	20/864	239/21069	0.002087	0.1735	0.1682	20	0.02315
GO:0009154	purine ribonucleotide catabolic process	7/864	45/21069	0.002214	0.1803	0.1749	7	0.008102
GO:0032731	positive regulation of interleukin-1 beta production	11/864	98/21069	0.002247	0.1803	0.1749	11	0.01273
GO:0007041	lysosomal transport	14/864	144/21069	0.002428	0.1909	0.1851	14	0.0162
GO:0061640	cytoskeleton-dependent cytokinesis	12/864	114/21069	0.002504	0.1909	0.1851	12	0.01389
GO:0045494	photoreceptor cell maintenance	7/864	46/21069	0.002521	0.1909	0.1851	7	0.008102
GO:0060117	auditory receptor cell development	5/864	24/21069	0.002543	0.1909	0.1851	5	0.005787
GO:0009214	cyclic nucleotide catabolic process	4/864	15/21069	0.002668	0.1913	0.1856	4	0.00463
GO:0097120	receptor localization to synapse	8/864	59/21069	0.002693	0.1913	0.1856	8	0.009259
GO:0007416	synapse assembly	17/864	194/21069	0.002712	0.1913	0.1856	17	0.01968
GO:0007214	gamma-aminobutyric acid signaling pathway	6/864	35/21069	0.002739	0.1913	0.1856	6	0.006944
GO:0016358	dendrite development	21/864	262/21069	0.002755	0.1913	0.1856	21	0.02431
GO:0060119	inner ear receptor cell development	7/864	47/21069	0.002859	0.1957	0.1898	7	0.008102
GO:0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	14/864	147/21069	0.002937	0.1981	0.1921	14	0.0162
GO:0120032	regulation of plasma membrane bounded cell projection assembly	18/864	213/21069	0.003063	0.1987	0.1927	18	0.02083
GO:0003148	outflow tract septum morphogenesis	5/864	25/21069	0.003072	0.1987	0.1927	5	0.005787
GO:0006836	neurotransmitter transport	19/864	230/21069	0.003074	0.1987	0.1927	19	0.02199
GO:0048841	regulation of axon extension involved in axon guidance	6/864	36/21069	0.003175	0.2024	0.1963	6	0.006944
GO:0060491	regulation of cell projection assembly	18/864	215/21069	0.003383	0.2102	0.2038	18	0.02083
GO:0097091	synaptic vesicle clustering	4/864	16/21069	0.003443	0.2102	0.2038	4	0.00463
GO:0007409	axonogenesis	32/864	468/21069	0.003454	0.2102	0.2038	32	0.03704
GO:0050688	regulation of defense response to virus	10/864	89/21069	0.003477	0.2102	0.2038	10	0.01157
GO:0048813	dendrite morphogenesis	14/864	150/21069	0.00353	0.2106	0.2043	14	0.0162
GO:0046058	cAMP metabolic process	5/864	26/21069	0.003677	0.2161	0.2095	5	0.005787
GO:1901888	regulation of cell junction assembly	19/864	234/21069	0.003714	0.2161	0.2095	19	0.02199
GO:0010634	positive regulation of epithelial cell migration	16/864	184/21069	0.003841	0.2207	0.214	16	0.01852
GO:0098659	inorganic cation import across plasma membrane	13/864	136/21069	0.003949	0.2214	0.2147	13	0.01505
GO:0099587	inorganic ion import across plasma membrane	13/864	136/21069	0.003949	0.2214	0.2147	13	0.01505
GO:0006195	purine nucleotide catabolic process	7/864	50/21069	0.004084	0.2263	0.2195	7	0.008102
GO:0051057	positive regulation of small GTPase mediated signal transduction	9/864	77/21069	0.004185	0.2282	0.2213	9	0.01042
GO:0009581	detection of external stimulus	14/864	153/21069	0.004217	0.2282	0.2213	14	0.0162
GO:0043433	negative regulation of DNA-binding transcription factor activity	18/864	220/21069	0.004308	0.2305	0.2235	18	0.02083
GO:0042278	purine nucleoside metabolic process	5/864	27/21069	0.004363	0.2307	0.2238	5	0.005787
GO:0009166	nucleotide catabolic process	9/864	78/21069	0.004563	0.2386	0.2314	9	0.01042
GO:0001952	regulation of cell-matrix adhesion	13/864	139/21069	0.004753	0.2431	0.2358	13	0.01505
GO:0030048	actin filament-based movement	13/864	139/21069	0.004753	0.2431	0.2358	13	0.01505
GO:0090303	positive regulation of wound healing	8/864	65/21069	0.004945	0.2439	0.2365	8	0.009259
GO:0030705	cytoskeleton-dependent intracellular transport	18/864	223/21069	0.004957	0.2439	0.2365	18	0.02083
GO:0086003	cardiac muscle cell contraction	9/864	79/21069	0.004967	0.2439	0.2365	9	0.01042
GO:0031503	protein-containing complex localization	16/864	189/21069	0.004978	0.2439	0.2365	16	0.01852
GO:0002253	activation of immune response	33/864	500/21069	0.005143	0.2493	0.2418	33	0.03819
GO:0050910	detection of mechanical stimulus involved in sensory perception of sound	4/864	18/21069	0.005424	0.256	0.2483	4	0.00463
GO:0048846	axon extension involved in axon guidance	6/864	40/21069	0.005447	0.256	0.2483	6	0.006944
GO:1902284	neuron projection extension involved in neuron projection guidance	6/864	40/21069	0.005447	0.256	0.2483	6	0.006944
GO:0002429	immune response-activating cell surface receptor signaling pathway	27/864	390/21069	0.005846	0.2694	0.2613	27	0.03125

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is glutamatergic synapse (0.0009468179), and the highest (among the lowest 10) is filopodium (0.01251404). The ratio is 13.21694, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0098978	glutamatergic synapse	34/906	354/22283	3.462e-06	0.0009468	0.0008154	34	0.03753
GO:0097060	synaptic membrane	37/906	408/22283	4.974e-06	0.0009468	0.0008154	37	0.04084
GO:0098858	actin-based cell projection	27/906	253/22283	5.063e-06	0.0009468	0.0008154	27	0.0298
GO:0045211	postsynaptic membrane	29/906	296/22283	1.22e-05	0.001711	0.001474	29	0.03201
GO:0005938	cell cortex	30/906	326/22283	2.903e-05	0.003257	0.002805	30	0.03311
GO:1990351	transporter complex	36/906	447/22283	8.301e-05	0.007396	0.00637	36	0.03974
GO:0042383	sarcolemma	17/906	147/22283	0.000103	0.007396	0.00637	17	0.01876
GO:0016010	dystrophin-associated glycoprotein complex	6/906	20/22283	0.0001055	0.007396	0.00637	6	0.006623
GO:1990531	phospholipid-translocating ATPase complex	5/906	14/22283	0.0001619	0.01009	0.00869	5	0.005519
GO:0030175	filopodium	15/906	128/22283	0.0002231	0.01251	0.01078	15	0.01656
GO:0034702	ion channel complex	27/906	323/22283	0.0003452	0.01747	0.01505	27	0.0298
GO:0099060	integral component of postsynaptic specialization membrane	11/906	80/22283	0.0003811	0.01747	0.01505	11	0.01214
GO:0090665	glycoprotein complex	6/906	25/22283	0.0004049	0.01747	0.01505	6	0.006623
GO:0032588	trans-Golgi network membrane	17/906	166/22283	0.0004447	0.01782	0.01535	17	0.01876
GO:0098984	neuron to neuron synapse	30/906	383/22283	0.0005008	0.01818	0.01565	30	0.03311
GO:0098948	intrinsic component of postsynaptic specialization membrane	11/906	83/22283	0.0005258	0.01818	0.01565	11	0.01214
GO:0005802	trans-Golgi network	27/906	333/22283	0.0005546	0.01818	0.01565	27	0.0298
GO:0098685	Schaffer collateral - CA1 synapse	11/906	84/22283	0.0005832	0.01818	0.01565	11	0.01214
GO:0005891	voltage-gated calcium channel complex	8/906	49/22283	0.0007427	0.02193	0.01889	8	0.00883
GO:0099023	vesicle tethering complex	10/906	74/22283	0.0007981	0.02239	0.01928	10	0.01104
GO:0098982	GABA-ergic synapse	11/906	88/22283	0.0008676	0.02318	0.01996	11	0.01214
GO:0099240	intrinsic component of synaptic membrane	17/906	179/22283	0.001046	0.02668	0.02298	17	0.01876
GO:1902495	transmembrane transporter complex	31/906	421/22283	0.001128	0.02752	0.0237	31	0.03422
GO:0099061	integral component of postsynaptic density membrane	8/906	53/22283	0.001265	0.02958	0.02547	8	0.00883
GO:0032421	stereocilium bundle	9/906	66/22283	0.00135	0.03029	0.02609	9	0.009934
GO:0099699	integral component of synaptic membrane	16/906	168/22283	0.001408	0.03039	0.02617	16	0.01766
GO:0032279	asymmetric synapse	27/906	357/22283	0.00156	0.03242	0.02792	27	0.0298
GO:0099146	intrinsic component of postsynaptic density membrane	8/906	56/22283	0.001822	0.03651	0.03144	8	0.00883
GO:0032420	stereocilium	8/906	57/22283	0.002046	0.03957	0.03408	8	0.00883
GO:0031252	cell leading edge	32/906	457/22283	0.00212	0.03965	0.03415	32	0.03532
GO:0001917	photoreceptor inner segment	9/906	72/22283	0.002501	0.04335	0.03733	9	0.009934
GO:0014069	postsynaptic density	26/906	351/22283	0.00251	0.04335	0.03733	26	0.0287
GO:0097730	non-motile cilium	16/906	178/22283	0.00255	0.04335	0.03733	16	0.01766
GO:0031256	leading edge membrane	17/906	196/22283	0.002772	0.04571	0.03937	17	0.01876
GO:0019897	extrinsic component of plasma membrane	16/906	180/22283	0.002852	0.04571	0.03937	16	0.01766
GO:0099572	postsynaptic specialization	27/906	374/22283	0.002999	0.04674	0.04025	27	0.0298
GO:0034703	cation channel complex	19/906	236/22283	0.003728	0.05642	0.04859	19	0.02097
GO:0016323	basolateral plasma membrane	20/906	254/22283	0.003822	0.05642	0.04859	20	0.02208
GO:0089717	spanning component of membrane	5/906	27/22283	0.004209	0.05912	0.05091	5	0.005519
GO:0001674	female germ cell nucleus	4/906	17/22283	0.004228	0.05912	0.05091	4	0.004415
GO:0034704	calcium channel complex	9/906	78/22283	0.004321	0.05912	0.05091	9	0.009934
GO:0098862	cluster of actin-based cell projections	15/906	172/22283	0.00454	0.06064	0.05222	15	0.01656
GO:0031253	cell projection membrane	27/906	388/22283	0.004913	0.0641	0.05521	27	0.0298
GO:0098791	Golgi apparatus subcompartment	32/906	484/22283	0.005033	0.06417	0.05527	32	0.03532
GO:0009925	basal plasma membrane	21/906	279/22283	0.005184	0.06419	0.05528	21	0.02318
GO:0032045	guanyl-nucleotide exchange factor complex	4/906	18/22283	0.005263	0.06419	0.05528	4	0.004415
GO:0099634	postsynaptic specialization membrane	12/906	128/22283	0.006012	0.07176	0.0618	12	0.01325
GO:1902711	GABA-A receptor complex	4/906	19/22283	0.006455	0.07278	0.06268	4	0.004415
GO:0099569	presynaptic cytoskeleton	3/906	10/22283	0.006487	0.07278	0.06268	3	0.003311
GO:1905103	integral component of lysosomal membrane	3/906	10/22283	0.006487	0.07278	0.06268	3	0.003311
GO:0016328	lateral plasma membrane	8/906	69/22283	0.006764	0.07323	0.06307	8	0.00883
GO:0099055	integral component of postsynaptic membrane	12/906	130/22283	0.006788	0.07323	0.06307	12	0.01325
GO:0043073	germ cell nucleus	8/906	70/22283	0.007371	0.07788	0.06708	8	0.00883
GO:0098839	postsynaptic density membrane	10/906	100/22283	0.007497	0.07788	0.06708	10	0.01104
GO:0031594	neuromuscular junction	8/906	71/22283	0.00802	0.0818	0.07045	8	0.00883
GO:0016342	catenin complex	5/906	32/22283	0.008883	0.08899	0.07664	5	0.005519
GO:0098936	intrinsic component of postsynaptic membrane	12/906	135/22283	0.009075	0.08902	0.07667	12	0.01325
GO:0032426	stereocilium tip	4/906	21/22283	0.009346	0.08902	0.07667	4	0.004415
GO:0005770	late endosome	23/906	332/22283	0.00942	0.08902	0.07667	23	0.02539
GO:0098687	chromosomal region	28/906	428/22283	0.009521	0.08902	0.07667	28	0.03091
GO:0030863	cortical cytoskeleton	11/906	120/22283	0.009798	0.09011	0.07761	11	0.01214
GO:0016529	sarcoplasmic reticulum	8/906	74/22283	0.01022	0.09135	0.07867	8	0.00883
GO:0045178	basal part of cell	21/906	297/22283	0.01026	0.09135	0.07867	21	0.02318
GO:0016528	sarcoplasm	9/906	90/22283	0.0109	0.09233	0.07952	9	0.009934
GO:0060077	inhibitory synapse	4/906	22/22283	0.01106	0.09233	0.07952	4	0.004415
GO:0030062	mitochondrial tricarboxylic acid cycle enzyme complex	3/906	12/22283	0.01119	0.09233	0.07952	3	0.003311
GO:0031166	integral component of vacuolar membrane	3/906	12/22283	0.01119	0.09233	0.07952	3	0.003311
GO:0031310	intrinsic component of vacuolar membrane	3/906	12/22283	0.01119	0.09233	0.07952	3	0.003311
GO:0001650	fibrillar center	14/906	174/22283	0.0118	0.09554	0.08228	14	0.01545
GO:0097731	9+0 non-motile cilium	12/906	140/22283	0.01192	0.09554	0.08228	12	0.01325
GO:0001726	ruffle	15/906	194/22283	0.01316	0.1025	0.08829	15	0.01656
GO:0031902	late endosome membrane	15/906	194/22283	0.01316	0.1025	0.08829	15	0.01656
GO:0044545	NSL complex	3/906	13/22283	0.01411	0.1085	0.09342	3	0.003311
GO:0031514	motile cilium	18/906	262/22283	0.02152	0.1632	0.1405	18	0.01987
GO:1902710	GABA receptor complex	4/906	27/22283	0.02262	0.1692	0.1457	4	0.004415
GO:0005923	bicellular tight junction	11/906	136/22283	0.02308	0.1704	0.1467	11	0.01214
GO:0043034	costamere	3/906	16/22283	0.02525	0.1815	0.1564	3	0.003311
GO:0098831	presynaptic active zone cytoplasmic component	3/906	16/22283	0.02525	0.1815	0.1564	3	0.003311
GO:0031527	filopodium membrane	4/906	28/22283	0.02556	0.1815	0.1564	4	0.004415
GO:0000781	chromosome, telomeric region	14/906	193/22283	0.02649	0.1858	0.16	14	0.01545
GO:0032587	ruffle membrane	9/906	106/22283	0.02877	0.1993	0.1716	9	0.009934
GO:0070160	tight junction	11/906	141/22283	0.02913	0.1993	0.1717	11	0.01214
GO:0045239	tricarboxylic acid cycle enzyme complex	3/906	17/22283	0.02975	0.2011	0.1732	3	0.003311
GO:0043296	apical junction complex	12/906	160/22283	0.03052	0.2019	0.1739	12	0.01325
GO:0044304	main axon	7/906	74/22283	0.0306	0.2019	0.1739	7	0.007726
GO:0005930	axoneme	12/906	161/22283	0.03181	0.2075	0.1787	12	0.01325
GO:0097014	ciliary plasm	12/906	162/22283	0.03314	0.2137	0.184	12	0.01325
GO:0019898	extrinsic component of membrane	21/906	335/22283	0.03368	0.2147	0.1849	21	0.02318
GO:0043083	synaptic cleft	3/906	18/22283	0.03465	0.2163	0.1863	3	0.003311
GO:0035097	histone methyltransferase complex	7/906	76/22283	0.03471	0.2163	0.1863	7	0.007726
GO:0030136	clathrin-coated vesicle	18/906	279/22283	0.03689	0.2255	0.1942	18	0.01987
GO:0034707	chloride channel complex	6/906	61/22283	0.0371	0.2255	0.1942	6	0.006623
GO:0034705	potassium channel complex	8/906	94/22283	0.03752	0.2255	0.1942	8	0.00883
GO:0030669	clathrin-coated endocytic vesicle membrane	10/906	129/22283	0.03779	0.2255	0.1942	10	0.01104
GO:0030027	lamellipodium	15/906	223/22283	0.03948	0.2332	0.2008	15	0.01656
GO:0044214	spanning component of plasma membrane	3/906	19/22283	0.03994	0.2334	0.201	3	0.003311
GO:0042641	actomyosin	7/906	80/22283	0.04399	0.2544	0.2191	7	0.007726
GO:0000793	condensed chromosome	18/906	286/22283	0.04514	0.2584	0.2225	18	0.01987
GO:0033276	transcription factor TFTC complex	3/906	20/22283	0.04561	0.2584	0.2226	3	0.003311
GO:0042613	MHC class II protein complex	8/906	98/22283	0.04618	0.2591	0.2231	8	0.00883

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

Here it is a barplot of most significantly enriched DO categories.

Barplot for enriched categories. Values on top have lower p values.

The most significant category was ‘autism spectrum disorder’.

4.3 Network of Cancer Genes

Here it is a barplot of most significantly enriched NCG categories.

Barplot for enriched categories. Values on top have lower p values.

The most significant category was clear_cell_renal_cancer.